| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 21,001,597 – 21,001,688 |
| Length | 91 |
| Max. P | 0.975671 |
| Location | 21,001,597 – 21,001,688 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 89.28 |
| Mean single sequence MFE | -28.34 |
| Consensus MFE | -22.18 |
| Energy contribution | -22.86 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.75 |
| SVM RNA-class probability | 0.975671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 21001597 91 - 23771897 AUCCACCAAGGUAGAGGAAGAAGUUAACUGCGCAAGCGCGUCGGCAGCGAUACUUCUUUGUAUAUCUGUCUCGCACU------CUCUACCCAUCUCA .........((((((((............((....))(((..(((((..((((......))))..))))).)))..)------)))))))....... ( -30.00) >DroSec_CAF1 19321 91 - 1 AUCCACCAAGGUAGAGGAAGAAGCUAACUGCGCAAGCGUGUCGGCAGCGAUACUUCUUUGUAUAUCUGUCUCGCACU------CUCUGCCCAUCUCA .........((((((((............((....))((((.(((((..((((......))))..)))))..)))))------)))))))....... ( -29.50) >DroSim_CAF1 26764 91 - 1 AUCCACCAAGGUAGAGGAAGAAGCUAACUGCGCAAGCGCGUCGGCAGCGAUACUUCUUUGUAUAUCUGUCUCGCACU------CUCUGCCCAUCUCA .........((((((((............((....))(((..(((((..((((......))))..))))).)))..)------)))))))....... ( -30.00) >DroEre_CAF1 27864 93 - 1 AUCCACCAAAGUAGAGGAAGAAGUUAGCUGCGCAAGCGCGUCGGCAGCUAUACUUCU-UGUAUAUCCGUCUCGCACUCGC---CGCUACCCAUCUCG ..........((((.((((((((((((((((....))((....))))))).))))))-)........(.....).....)---).))))........ ( -24.50) >DroYak_CAF1 25344 96 - 1 AUCCACCAAAGUAGAGGAAGAAGUUAACUGCGCAAGCGCGUCGGCAGCGAUACUUCU-UGUAUAUUUGUCUACCCAUCUCUUUCUCUACCCAUCUCG ..........(((((((((((........((....))(.((.(((((..((((....-.))))..))))).)).)...)))))))))))........ ( -27.70) >consensus AUCCACCAAGGUAGAGGAAGAAGUUAACUGCGCAAGCGCGUCGGCAGCGAUACUUCUUUGUAUAUCUGUCUCGCACU______CUCUACCCAUCUCA .........(((((((.............((....))(((..(((((..((((......))))..))))).))).........)))))))....... (-22.18 = -22.86 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:47 2006