Locus 7855

Sequence ID 3L_DroMel_CAF1
Location 20,999,672 – 20,999,778
Length 106
Max. P 0.736803
window12788

overview

Window 8

Location 20,999,672 – 20,999,778
Length 106
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 85.53
Mean single sequence MFE -19.06
Consensus MFE -13.46
Energy contribution -15.38
Covariance contribution 1.92
Combinations/Pair 1.21
Mean z-score -1.96
Structure conservation index 0.71
SVM decision value 0.44
SVM RNA-class probability 0.736803
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20999672 106 - 23771897
CCUUUUUUUUUUUAAUUUUUCAGUCAAU-GAUGCCAGGUGACGGCCAAAAAUUUAUACAAAAUUUAGACAAAAAUAACUAAAACUUGACUGGAAAAUUACGGAUAAA
........((..(((((((((((((((.-...(((.(....)))).................(((((..........)))))..)))))))))))))))..)).... ( -23.40)
>DroSec_CAF1 17374 104 - 1
CCUUUU--UUUUUAAUUUUUUAGUCAAU-GAUGCCAGGUGACGGCCAAAAAUUUAUACAAAAUUUAGACAAAAAUAACUAAAAUUUGACUGGAAAAUUACGGAUAAA
......--((..(((((((((((((((.-...(((.(....)))).................(((((..........)))))..)))))))))))))))..)).... ( -21.40)
>DroSim_CAF1 24823 104 - 1
CCUUUU--UUUUUAAUUUUUUAGUCAAU-GAUGCCAGGUGACGGCCAAAAAUGUAUACAAAAUUUAGACAAAAAUAACUAAAAUUUGACUGAAAAAUUACGGAUAAA
......--((..(((((((((((((((.-...(((.(....)))).................(((((..........)))))..)))))))))))))))..)).... ( -21.80)
>DroEre_CAF1 25937 103 - 1
UCUUUUU-UAAU-GCCAAUAAUGUCAAU-AAUGCCAGGUGACGGCCAA-AACUUAUACAAAAUUUAGACAAAAAUAACCAAAACUUGACUGGAAAAUUACAGAUAAA
...(((.-((((-.(((.....(((((.-...(((.(....))))...-............((((......)))).........))))))))...)))).))).... ( -11.10)
>DroYak_CAF1 23372 106 - 1
UCCUUUU-UUUUUAGUUUUUCAGUCUAUGAGAGCCAGGUGACAGCCAAAAACUUGUUCAAAAUUUAGACAAAAAAAAAUAAAACUUGAUUGGAAAAUCACGGAUAAA
(((((((-(((((.((((.(((.....)))((((.((((...........)))))))).......))))))))))))).......(((((....))))).))).... ( -17.60)
>consensus
CCUUUUU_UUUUUAAUUUUUCAGUCAAU_GAUGCCAGGUGACGGCCAAAAAUUUAUACAAAAUUUAGACAAAAAUAACUAAAACUUGACUGGAAAAUUACGGAUAAA
............(((((((((((((((.....(((.(....)))).................(((((..........)))))..)))))))))))))))........ (-13.46 = -15.38 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:44 2006