Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,997,864 – 20,997,963 |
Length | 99 |
Max. P | 0.783222 |
Location | 20,997,864 – 20,997,963 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.96 |
Mean single sequence MFE | -23.32 |
Consensus MFE | -20.75 |
Energy contribution | -20.88 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.10 |
Mean z-score | -1.89 |
Structure conservation index | 0.89 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20997864 99 - 23771897 GAGCGUCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGAGUCGCGUCGCGCGGCUACAUUCUUUUUGUUUAUUACUUCU (((((....))).))...((..((((.........))))..))((((((....))))))((((((...))))))......................... ( -22.20) >DroSec_CAF1 15432 99 - 1 GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGUGUCGCGUUGCGCGGCUACAUUCUUUUUGUUAAUUACUUCU ..(..((((((((.(...((..((((.........))))..)).(((((....)))))......).))))))))..)...................... ( -26.10) >DroSim_CAF1 22885 99 - 1 GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUUCAAGUGUCGCGUUGCGCGGCUACAUUCUUUUUGUUAAUUACUUCU ..(..((((((((.(...((..((((.........))))..)).(((((....)))))......).))))))))..)...................... ( -22.50) >DroYak_CAF1 21644 99 - 1 GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGAGUCGCGUCGCGCAACUACAUUCUUUUUGUUUAUUACUUCU ..(((((.((((......((..((((.........))))..))((((((....))))))).)))))))).............................. ( -22.50) >consensus GAGCGGCUGCGCAUCAUUCUUUGCCAUUUUAUCUUUGGUUUAGUUUUGGAAUUCCAAGAGUCGCGUCGCGCGGCUACAUUCUUUUUGUUAAUUACUUCU ..(.((((((((......((..((((.........))))..)).(((((....))))).........)))))))).)...................... (-20.75 = -20.88 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:42 2006