Locus 7851

Sequence ID 3L_DroMel_CAF1
Location 20,996,539 – 20,996,641
Length 102
Max. P 0.500000
window12782

overview

Window 2

Location 20,996,539 – 20,996,641
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.33
Mean single sequence MFE -25.93
Consensus MFE -16.06
Energy contribution -15.98
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -2.14
Structure conservation index 0.62
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20996539 102 - 23771897
UAGACUCUCUCGGAUCACCCACGAUCUGAUUAGCUGAUUAGC--------AA----------UCUACUGACCUGAUCCACUUUGCACACAAAGGCAAAGGCCGCGUGAUCAUAAAUCAUA
............((((((.(..((((.(.((((..(((....--------.)----------))..)))).).))))..((((((........))))))...).)))))).......... ( -23.60)
>DroSec_CAF1 14138 102 - 1
UAGACUCUCUCGGAUCACCCACGAUCCGAUUAGCUGAUUAGC--------AA----------UCUAGUGACCUGAUCCACUUUGCACACAAAGCCAAAGGCCGCGUGAUCAUAAAUCAUA
((((.....(((((((......)))))))...(((....)))--------..----------))))(((.(((......(((((....)))))....))).)))(((((.....))))). ( -25.40)
>DroSim_CAF1 21560 102 - 1
UAGACUCUCUCGGAUCACCCACGAUCCGAUUAGCUGAUUAGC--------AA----------UCUAGUGACCUGAUCCACUUUGCACACAAAGCCAAAGGCCGCGUGAUCAUAAAUCAUA
((((.....(((((((......)))))))...(((....)))--------..----------))))(((.(((......(((((....)))))....))).)))(((((.....))))). ( -25.40)
>DroEre_CAF1 22852 110 - 1
UUUACUAUUUCAGAUCACCCACGAUCUGAUUAGCUGAUUAGCUGGCUAGGAA----------UCUAGUGACCUGAUCCACUUUGCACACAAAGCCAAAGGCCGCGUGAUCAUAAAUCAUA
....(((..(((((((......))))))).))).((((((((.((((.(((.----------((.((....))))))).(((((....))))).....)))))).))))))......... ( -28.80)
>DroYak_CAF1 20253 102 - 1
UUUACUAUUUCAGAUCACCCACGAUCGGAUUAGCUGAUUAGC--------AA----------UCUACUGACCUGAUCCACUUUGCACACAAAGGCAAAGGCCGCGUGAUCAUAAAUCAUA
............((((((.(..((((((.((((..(((....--------.)----------))..)))).))))))..((((((........))))))...).)))))).......... ( -27.70)
>DroAna_CAF1 11926 102 - 1
---------UUGGAUCGUGGGUGAACUGAUUAGCUGAUUAGC--------GAGUGUCUACUGACUACUGACCUGAUCCACUUUGCACACAAAGCCUC-CACCGCGUGAUCAUAAAUCAUA
---------...(((((((((((............((((((.--------.((((((....))).)))...))))))..(((((....)))))....-)))).))))))).......... ( -24.70)
>consensus
UAGACUCUCUCGGAUCACCCACGAUCUGAUUAGCUGAUUAGC________AA__________UCUACUGACCUGAUCCACUUUGCACACAAAGCCAAAGGCCGCGUGAUCAUAAAUCAUA
.........(((((((......)))))))...((.((((((..............................))))))..(((((....))))).........))(((((.....))))). (-16.06 = -15.98 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:38 2006