| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,347,693 – 2,347,783 |
| Length | 90 |
| Max. P | 0.682057 |
| Location | 2,347,693 – 2,347,783 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 93.85 |
| Mean single sequence MFE | -27.92 |
| Consensus MFE | -21.36 |
| Energy contribution | -22.36 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.682057 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2347693 90 - 23771897 AGCACGCAUGUCGGCGCCAGGACUUGGCAGGGCCAAAAAAAUUAAAUAUGCCUCACAGAAUGGGACAAGAGAAAGGUGUGCUCGUGGACA (((((((...((((((((((...)))))...)))..............((.((((.....)))).))...))...)))))))........ ( -23.70) >DroSec_CAF1 96813 89 - 1 AGCACGCAUGUCGGCGCCAGGACUCGACUGGGCCAAA-AAAUUAAAUAUGCCUCACAGAAUGGGACAUUCGAAAGGUGUGCUCGUGGACA (((((((((((((((.((((.......)))))))...-............((.........))))))).(....))))))))........ ( -28.80) >DroSim_CAF1 97761 89 - 1 AGCACGCAUGUCGGCGCCAGGACUCGACUGGGCCAAA-AAAUUAAAUAUGCCUCACAGAAUGGGACAUUAGAAAGGUGUGCUCGUGGACA (((((((...(((((.((((.......)))))))...-.........(((.((((.....)))).)))..))...)))))))........ ( -27.50) >DroEre_CAF1 103494 89 - 1 AGCACGCAUGUCGGCGCCAGGACUCGACUGGGCCAAA-AAAUUAAAUAUGCCUCACAGAAUGGGGCAUUAGAAAGGUGUGCCCGUGGACA .((((((...(((((.((((.......)))))))...-.........((((((((.....))))))))..))...))))))......... ( -33.90) >DroYak_CAF1 100045 89 - 1 AGCACGCAUGUCGGCGCCAGGACUCGACGGGUCCGAA-AAAUUAAAUAUGCCUCACAGAAUGGCAGAUUAGAAAGGUGUGCUCGUGGACA (((((((...((.......(((((.....)))))...-......(((.((((.........)))).))).))...)))))))........ ( -25.70) >consensus AGCACGCAUGUCGGCGCCAGGACUCGACUGGGCCAAA_AAAUUAAAUAUGCCUCACAGAAUGGGACAUUAGAAAGGUGUGCUCGUGGACA .((((((...(((((.((((.......)))))))..............((.((((.....)))).))...))...))))))......... (-21.36 = -22.36 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:08 2006