Locus 7848

Sequence ID 3L_DroMel_CAF1
Location 20,995,664 – 20,995,779
Length 115
Max. P 0.990608
window12777

overview

Window 7

Location 20,995,664 – 20,995,779
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 95.57
Mean single sequence MFE -14.64
Consensus MFE -13.78
Energy contribution -12.86
Covariance contribution -0.92
Combinations/Pair 1.21
Mean z-score -1.68
Structure conservation index 0.94
SVM decision value 2.22
SVM RNA-class probability 0.990608
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20995664 115 + 23771897
UUUAAAAGCGAACCAGAAAGCCAACACAAUUUUCGUAAAAACUUUAAAACAACGAAAAACUUGUUCAACAAAAUUGCAAUUACAAACAAA-GUUUCUAAGAAGCGAGCGAAACAUA
.......((((((.((...(......)..(((((((...............))))))).)).)))).......((((..(((.((((...-)))).)))...))))))........ ( -13.16)
>DroSec_CAF1 13264 114 + 1
UUUA-AAGUGAACCAGAAAGCCAACACAAUUUUCGUAAAAACUUUAAAACAACGAAAAACUUGUUCAACAAAAUUGCAAUUACAAACAAA-GUUUCUAAGAAGCGAGCGAAACACA
....-..(((...................(((((((...............)))))))..((((((.......(((......))).....-(((((...)))))))))))..))). ( -14.96)
>DroSim_CAF1 20689 114 + 1
UUUA-AAGUGAACCAGAAAGCCAACACAAUUUUCGUAAAAACUUUAAAACAACGAAAAACUUGUUCAACAAAAUUGCAAUUACAAACAAA-GUUUCUAAGAAGCGAGCGAAACAUA
((((-((((......(((((.........)))))......))))))))............((((((.......(((......))).....-(((((...)))))))))))...... ( -14.70)
>DroEre_CAF1 21946 115 + 1
UUUA-AAGUGAACCAGACAGCCAACACAAUUUUCGUAAAAACUUUAAAACAGCGAAAAACUUGUUCAACAAAAUUGCAAUUACAAACAAAAGUUUCUAAGAAACGAACGAAACACA
....-..(((...................(((((((...............)))))))..((((((.......(((......)))......(((((...)))))))))))..))). ( -15.26)
>DroYak_CAF1 19366 115 + 1
UUUA-AAGUGAACCAGAAAGCCAACACAAUUUUUGUAAAAACUUUAAAACAGCGAAAAACUUGUUCAACAAAAUUGCAAUUACAAACAAAUGUUUCUAAGAAACGAACGAAGCACA
((((-((((....((((((..........)))))).....))))))))............((((((.......(((......)))......(((((...)))))))))))...... ( -15.10)
>consensus
UUUA_AAGUGAACCAGAAAGCCAACACAAUUUUCGUAAAAACUUUAAAACAACGAAAAACUUGUUCAACAAAAUUGCAAUUACAAACAAA_GUUUCUAAGAAGCGAGCGAAACACA
.......(((...................(((((((...............)))))))..((((((.......(((......)))......(((((...)))))))))))..))). (-13.78 = -12.86 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:34 2006