Locus 7845

Sequence ID 3L_DroMel_CAF1
Location 20,994,054 – 20,994,144
Length 90
Max. P 0.645924
window12772

overview

Window 2

Location 20,994,054 – 20,994,144
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 98.22
Mean single sequence MFE -26.50
Consensus MFE -24.50
Energy contribution -24.54
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -1.30
Structure conservation index 0.92
SVM decision value 0.23
SVM RNA-class probability 0.645924
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20994054 90 - 23771897
CAUCGAAUGCGGCGACGCAGCGUAAUUGGGUGGCAAGCGAUUAUACAAGCCUGGCCGAAAGGCAACACAAAGAGCCAACAACUGCAGCCG
.......((((....))))(((((.(((..((((..((..........))...(((....)))..........)))).))).))).)).. ( -27.60)
>DroSec_CAF1 11701 90 - 1
CAUCGAAUGCGGCGACGCAGCGUAAUUGGGUGGCAAGCGAUUAUACAAGCCUGGCCGAAAGGCAACACAAAGAGCCAACAACUGCAGCCG
.......((((....))))(((((.(((..((((..((..........))...(((....)))..........)))).))).))).)).. ( -27.60)
>DroSim_CAF1 19105 90 - 1
CAUCGAAUGCGGCGACGCAGCGUAAUUGGGUGGCAAGCGAUUAUACAAGCCUGGCCGAAAGGCAACACAAAGAGCCAACAACUGCAGACG
.......((((....))))..(((.(((..((((..((..........))...(((....)))..........)))).))).)))..... ( -26.60)
>DroEre_CAF1 20194 90 - 1
CAUCGAAUGCGGCGACGCAGCGUAAUUGGGUGGCAAGCGAUUAUACAAGCCUGGCCGAAAGGCAACACAAAGAGCCAACAACUGCAGCCG
.......((((....))))(((((.(((..((((..((..........))...(((....)))..........)))).))).))).)).. ( -27.60)
>DroYak_CAF1 17972 90 - 1
CAUUGAAUGCGGCGACGCAGCGUAAUUGGGUGGCAAGCGAUUAUACAAGCCUGGCUGAAAGGCAACACAAAGAGGCAACAACUGCAGCCG
.........((((...((((.(((((((.........)))))))....((((.(((....)))..(.....))))).....)))).)))) ( -23.10)
>consensus
CAUCGAAUGCGGCGACGCAGCGUAAUUGGGUGGCAAGCGAUUAUACAAGCCUGGCCGAAAGGCAACACAAAGAGCCAACAACUGCAGCCG
.......((((....))))..(((.(((..((((..((..........))...(((....)))..........)))).))).)))..... (-24.50 = -24.54 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:29 2006