Locus 7844

Sequence ID 3L_DroMel_CAF1
Location 20,993,904 – 20,994,014
Length 110
Max. P 0.525930
window12771

overview

Window 1

Location 20,993,904 – 20,994,014
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 85.06
Mean single sequence MFE -18.71
Consensus MFE -13.99
Energy contribution -14.54
Covariance contribution 0.55
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.525930
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20993904 110 - 23771897
AAGUGAUUCAAAAAUCUAAAAGCAGCGAAAACGCACUGGAAAAUGCAUCACACUUUUUUUUUUGUUAACGGGAUAAGAGAGUGAACAAAGAAAAGAGAGAGCUCAAAGAC
..(((((.((....((((......(((....)))..))))...)).))))).((((((((((((((.((...........)).))))))))))))))............. ( -21.70)
>DroSec_CAF1 11554 107 - 1
AAGUGAUUCAAAAAUCUAAAAGAAGCGAAAACGCACUGGAAAAUGCAUCACACUUUU---UUUGUUAACGGGAUAAGAGAGUGAGCAAAGAAAAGAGAGAGCUCAAAGAC
..(((((.((....((.....)).(((....))).........)).)))))..((((---((((((.....))))))))))(((((..............)))))..... ( -18.34)
>DroSim_CAF1 18958 107 - 1
AAGUGAUUCAAAAAUCUAAAAGCAGCGAAAACGCACUGGAAAAUGCAUCACACUUUU---UUUGUUAACGGGAUAAGAGAGUGAGCAAAGAAAAGAGAGAGCUCAAAGAC
..............(((...(((.(((....))).((......(((.((((.(((((---((((....)))))..)))).)))))))......)).....)))...))). ( -18.40)
>DroEre_CAF1 20050 104 - 1
AAGUGAUUCAAAAUCAAAAAUGCAGCGAAAACGCACUGGAAAAUGCAUCACACUUU----UUUGUUAACGGGAUAAGAGAGUGAGCAAAGA--AGAGAGAGCUCAAAGAC
...((((.....))))....(((.(((....)))................((((((----((((((.....)))))))))))).)))....--.(((....)))...... ( -20.90)
>DroYak_CAF1 17848 84 - 1
AAGUGAUUCAAAAUCAAAAA-----------------------UGCAUCACACUUUU--UUUUGGUAACGGGAUAAGAGAGUGAGCAAAGA-AAGAGAGAGUUCAAAGAC
...((((((....((.....-----------------------(((.((((.(((((--(((((....))))).))))).)))))))....-..))..))).)))..... ( -14.20)
>consensus
AAGUGAUUCAAAAAUCUAAAAGCAGCGAAAACGCACUGGAAAAUGCAUCACACUUUU___UUUGUUAACGGGAUAAGAGAGUGAGCAAAGAAAAGAGAGAGCUCAAAGAC
...((((((...............(((....))).........(((.((((.(((((...((((....))))..))))).)))))))...........))).)))..... (-13.99 = -14.54 +   0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:28 2006