Locus 7841

Sequence ID 3L_DroMel_CAF1
Location 20,990,576 – 20,990,666
Length 90
Max. P 0.800005
window12765

overview

Window 5

Location 20,990,576 – 20,990,666
Length 90
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 92.32
Mean single sequence MFE -33.58
Consensus MFE -31.28
Energy contribution -31.28
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 0.93
SVM decision value 0.61
SVM RNA-class probability 0.800005
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20990576 90 + 23771897
-----U-UGGA--UAGCCACACAGUCAUCGGGCUUAACGCUUGGCUCAGUCGCUGAGCGGAUCGGAGUGAAGCCAGUGAGGCAUUACGCUGCCCAUUU
-----.-..((--(..(......)..)))((((....((((..((......))..))))....((.((((.(((.....))).)))).)))))).... ( -31.70)
>DroSec_CAF1 8148 95 + 1
GAUACU-UGGA--UAGCCACACAGUCAUCGGGCUUAACGCUUGGCUCAGUCGCUGAGCGGAUCGGAGUGAAGCCAGUGAGGCAUUACGCUGCCCAUUU
((((((-(((.--...)))...))).)))((((....((((..((......))..))))....((.((((.(((.....))).)))).)))))).... ( -33.80)
>DroSim_CAF1 15615 95 + 1
GAUACU-UGGA--UAGCCACACAGUCAUCGGGCUUAACGCUUGGCUCAGUCGCUGAGCGGAUCGGAGUGAAGCCAGUGAGGCAUUACGCUGCCCAUUU
((((((-(((.--...)))...))).)))((((....((((..((......))..))))....((.((((.(((.....))).)))).)))))).... ( -33.80)
>DroEre_CAF1 16673 98 + 1
GCUGCUUUGGACUCAGCCAUACAGUCAUCGGGCUUAACGCUUGGCUCAGUCGCUGAGCGGACCGGAGUGAAGCCAGUGAGGCAUUACGCUGCCCAUUU
((((...(((......)))..))))....((((....((((..((......))..))))....((.((((.(((.....))).)))).)))))).... ( -35.20)
>DroYak_CAF1 14493 91 + 1
-------UGGACUCAGCCAUACAGUCAUCGGGCUUAACGCUUGGCUCAGUCGCUGAGCGGGUCGGAGUGAAGCCAGUGAGGCAUUACGCUGCCCAUUU
-------..(.((((((.((..(((((...(((.....))))))))..)).)))))))(((.(((.((((.(((.....))).)))).)))))).... ( -33.40)
>consensus
G_U_CU_UGGA__UAGCCACACAGUCAUCGGGCUUAACGCUUGGCUCAGUCGCUGAGCGGAUCGGAGUGAAGCCAGUGAGGCAUUACGCUGCCCAUUU
.......(((......)))..........((((....((((..((......))..))))....((.((((.(((.....))).)))).)))))).... (-31.28 = -31.28 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:23 2006