Locus 784

Sequence ID 3L_DroMel_CAF1
Location 2,346,376 – 2,346,489
Length 113
Max. P 0.997647
window1207

overview

Window 7

Location 2,346,376 – 2,346,489
Length 113
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 85.70
Mean single sequence MFE -35.54
Consensus MFE -33.12
Energy contribution -33.56
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -2.46
Structure conservation index 0.93
SVM decision value 2.90
SVM RNA-class probability 0.997647
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2346376 113 - 23771897
-AUGGC-UGCAUAGCACUGUUUUCUCUCAGUGCCUGUGUGUAUGUCCUGCAUGCACGCGUUUUCCAGGCGCCAAAAACUGAUGGCCCCUCCGACUGGAAAACAAUGAAACUCAUU
-((((.-..(((.((((((........))))))..(((((((((.....)))))))))((((((((((.((((........)))).))......)))))))).)))....)))). ( -38.80)
>DroSec_CAF1 95464 101 - 1
--------------CACUGGUUUCUCUCAGUGCAUGUGUGUAUGUCCGCCAUGCACGCGUUUUCCAGGCGCCAAAAACUGAUGGCCCCUCCGACUGGAAAACAAUGAAACUCAUU
--------------....((((((.....(((((((.(((......))))))))))..((((((((((.((((........)))).))......))))))))...)))))).... ( -34.90)
>DroSim_CAF1 96417 114 - 1
UAUGGC-UGGAUAGCACUAAUUUCUCUCAGUGCAUGUGUGUAUGUCCGCCAUGCACGCGUUUUCCAGGCGCCAAAAACUGAUGGCCCCUCCGACUGGAAAACAAUGAAACUCAUU
...(.(-((((..(((((..........)))))(((((((((((.....)))))))))))..))))).)((((........))))...(((....)))....((((.....)))) ( -34.50)
>DroEre_CAF1 102106 114 - 1
AAUGGC-UUCGUAGUACUGGUUCUUCUCAGUGCAUGUGUGUAUGUCCUGUACUCACGCGUUUUCCAGGCGCCAAAACCUGAUGGCUCCUCUGACUGGGAAACAAUGAAACUCAUU
(((((.-(((((.(((((((......)))))))..(((.((((.....)))).)))..(((((((((..((((........))))((....))))))))))).))))).).)))) ( -34.30)
>DroYak_CAF1 98674 112 - 1
--UGGUUUUAGUAGCACUGGUUCUUCUCAGUGCAUGUGUGUAUGUCCUGUAUGCACGCGUUUUCCAGGCGCCAAAA-CUGAUGGCUCCUCUGACUGCGAAACAAUGAAACUCAUU
--.(((((((...(((((((......)))))))..(((((((((.....)))))))))((..((.(((.((((...-....)))).)))..))..)).......))))))).... ( -35.20)
>consensus
_AUGGC_UGCAUAGCACUGGUUUCUCUCAGUGCAUGUGUGUAUGUCCUGCAUGCACGCGUUUUCCAGGCGCCAAAAACUGAUGGCCCCUCCGACUGGAAAACAAUGAAACUCAUU
.............(((((((......)))))))..(((((((((.....)))))))))((((((((((.((((........)))).))......))))))))((((.....)))) (-33.12 = -33.56 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:07 2006