| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,984,203 – 20,984,306 |
| Length | 103 |
| Max. P | 0.942978 |
| Location | 20,984,203 – 20,984,306 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 95.59 |
| Mean single sequence MFE | -32.32 |
| Consensus MFE | -29.40 |
| Energy contribution | -29.60 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.942978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20984203 103 + 23771897 AUAAUGUUGUUUUGCACGGCCUGGAGUGGGCAGCAUUGGGUG--GUUGGUGUUAUGUAGAUGGUGGAUGGUACGAUAUAACAUCAGAACUCCCACGACGAAGGCA ....((((((..(((...((((.....)))).)))..(((..--.((((((((((((..((.(....).))...))))))))))))....)))))))))...... ( -29.80) >DroSec_CAF1 1877 105 + 1 AUAAUGCUGUUUUGCACGGCCUGGAGUGGGCAGCACUGGGUGGGGUUGGUGUUAUGUAGAUGGUGGAUGGUACGAUAUAACAUCAGAACUCCCACGACGGAGGCA ....((((....(((...((((.....)))).)))(((.((((((((((((((((((..((.(....).))...))))))))))))...))))))..))).)))) ( -34.40) >DroSim_CAF1 9276 105 + 1 AUAAUGUUGUUUUGCACGGCCUGGAGUGGGCAGCAUUGGGUGGGGUUGGUGUUAUGUAGAUGGUGGAUGGUACGAUAUAACAUCAGAACUCCCACGACGGAGGCA ....((((((..(((...((((.....)))).)))..(((.((..((((((((((((..((.(....).))...))))))))))))..)))))))))))...... ( -32.30) >DroEre_CAF1 10308 102 + 1 AUAAUGUUGUUUUGCACGGCCUGAAGUGGGCAGCAGUGGGUG--GUUGGUGUUAUGUAGAUGGUGGAUGGUACGAUAUAACAUCAGAACUCCCACGACGAG-GCA .......((((((((...((((.....))))....(((((..--.((((((((((((..((.(....).))...))))))))))))....)))))).))))-))) ( -32.50) >DroYak_CAF1 7992 103 + 1 AUAAUGUUGUUUUGCACGGCCUGAAGUGGGCAGCAGUGGGUG--GUUGGUGUUAUGUAGAUGGUGGAUGGUACGAUAUAACAUCAGAACUCCCACGACGAGGGCA ....(.(((((.(((...((((.....)))).)))(((((..--.((((((((((((..((.(....).))...))))))))))))....)))))))))).)... ( -32.60) >consensus AUAAUGUUGUUUUGCACGGCCUGGAGUGGGCAGCAGUGGGUG__GUUGGUGUUAUGUAGAUGGUGGAUGGUACGAUAUAACAUCAGAACUCCCACGACGAAGGCA ....((((((..(((...((((.....)))).)))..(((.(...((((((((((((..((.(....).))...))))))))))))..).)))))))))...... (-29.40 = -29.60 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:19 2006