Locus 7838

Sequence ID 3L_DroMel_CAF1
Location 20,983,521 – 20,983,625
Length 104
Max. P 0.971656
window12760

overview

Window 0

Location 20,983,521 – 20,983,625
Length 104
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 82.29
Mean single sequence MFE -19.23
Consensus MFE -12.95
Energy contribution -13.63
Covariance contribution 0.68
Combinations/Pair 1.21
Mean z-score -2.63
Structure conservation index 0.67
SVM decision value 1.68
SVM RNA-class probability 0.971656
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20983521 104 - 23771897
CGAAAUAUUUUUGUUACCCAGAAACCAGGUCCGAAAAAACACUGCACAAA-AUAACAUUCAUAAAAUGUGCA---------GGGAAACAAAAGUAUUUCUCAUACAAA-AUGCGA--
.((((((((((((((.(((.........((........))..((((((..-...............))))))---------))).)))))))))))))).........-......-- ( -24.83)
>DroSec_CAF1 1193 104 - 1
CGAAAUAU-UUUGUUAUCCAGAAACCAGGUCCCAA-AAACACUGCAUAAA-AUAAAAUUCAUAAAAUGUGCA---------GAAAAACAAAAGUAUUUCUCAUACAAA-AUGCGAGU
.(((((((-((((((..((........))......-.....(((((((..-...............))))))---------)...))).)))))))))).........-........ ( -16.03)
>DroSim_CAF1 8596 104 - 1
CGAAAUAUGUUUGUUAUCCAGAAACCAGGUCCCAA--AACACUGCACAAA-AUAAAAUUAAAAAAAUGUGCA---------GGAAAACAAAAGUAUUUCUCAUACAAA-AUGCGAGU
.(((((((.((((((.(((........(....)..--.....((((((..-...............))))))---------))).)))))).))))))).........-........ ( -20.83)
>DroEre_CAF1 4323 113 - 1
CAAAAUAUUUUUGUUAUUCAAAAACACUGCCC--A-AAACAAUGCUUAAAAAAUAAAUUCAUAAGAUGUGCAGGGAGUGCAGGGAAACAAAAGUAUUUCUCAUACAAA-ACGCGAGA
..(((((((((((((.(((.....((((.(((--.-..(((...((((.............)))).)))...)))))))...))))))))))))))))..........-.(....). ( -22.22)
>DroYak_CAF1 7334 107 - 1
CAAAAUAUUUGUGUUAUUCAGAAACAAGGUCUUAA-AAAAACUGCUUAAAAAUAAAAUUCAAAAAAUGUGCA---------GGGAAACAAAAGUAUUUCUCAUACAAAGAGGCGAGA
.......(((((...........)))))(((((..-.....((((........................)))---------)(....)....((((.....))))...))))).... ( -12.26)
>consensus
CGAAAUAUUUUUGUUAUCCAGAAACCAGGUCCCAA_AAACACUGCAUAAA_AUAAAAUUCAUAAAAUGUGCA_________GGGAAACAAAAGUAUUUCUCAUACAAA_AUGCGAGA
.((((((((((((((.(((.......((.............))(((((..................)))))..........))).)))))))))))))).................. (-12.95 = -13.63 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:18 2006