Locus 7832

Sequence ID 3L_DroMel_CAF1
Location 20,979,406 – 20,979,526
Length 120
Max. P 0.786816
window12746

overview

Window 6

Location 20,979,406 – 20,979,526
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.50
Mean single sequence MFE -33.38
Consensus MFE -32.80
Energy contribution -32.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.78
Structure conservation index 0.98
SVM decision value 0.57
SVM RNA-class probability 0.786816
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20979406 120 - 23771897
CUGAAGAGGGACUACUGCGCGAAAGGAAAGACCAACUUCGAGAUGCUCGAGAUGAAUUAAGCGCAAUGGCAACAAAAGAUUUUCCCUCUUGGCUGUCAUAAUAUUGAAAGAACGCCCAGG
(((((((((((....(((((....((.....))...((((((...)))))).........))))).((....))........))))))))(((..(((......)))......)))))). ( -35.10)
>DroSim_CAF1 4535 120 - 1
AUGAAGAGGGACUGCUGCGCGAAAGGAAAGACCAACUUCGAGAUGCUCGAGAUGAAUUAAGCGCAAUGGCAACAAAAGAUUUUCCCUCUUGGCUGUCAUAAUAUUGAAAGAACGCCCAGG
...((((((((....(((((....((.....))...((((((...)))))).........))))).((....))........))))))))(((..(((......)))......))).... ( -32.80)
>DroEre_CAF1 201 120 - 1
AUGAAGAGGGACUACUGCGCGAAAGGAGAGACCAACUUCGAGAUGCUCGAGAUGAAUACAGCGCAAUGGCAACAAAAGAUUUUCCCUCUUGGCUGUCAUAAUAUUGAAAGAACGCCCAGG
...((((((((....(((((....((.....))...((((((...)))))).........))))).((....))........))))))))(((..(((......)))......))).... ( -32.80)
>DroYak_CAF1 3099 120 - 1
AUGAAGAGGGACUACUGCGCGAAAGGAAAGACCAACUUCGAGAUGCUCGAGAUGAAUUAAGCGCAAUGGCAACAAAAGAUUUUCCCUCUUGGCUGUCAUAAUAUUGAAAGAACGCCCAGU
...((((((((....(((((....((.....))...((((((...)))))).........))))).((....))........))))))))(((..(((......)))......))).... ( -32.80)
>consensus
AUGAAGAGGGACUACUGCGCGAAAGGAAAGACCAACUUCGAGAUGCUCGAGAUGAAUUAAGCGCAAUGGCAACAAAAGAUUUUCCCUCUUGGCUGUCAUAAUAUUGAAAGAACGCCCAGG
...((((((((....(((((....((.....))...((((((...)))))).........))))).((....))........))))))))(((..(((......)))......))).... (-32.80 = -32.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:05 2006