Locus 7831

Sequence ID 3L_DroMel_CAF1
Location 20,978,519 – 20,978,633
Length 114
Max. P 0.634255
window12745

overview

Window 5

Location 20,978,519 – 20,978,633
Length 114
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.50
Mean single sequence MFE -31.67
Consensus MFE -20.74
Energy contribution -21.63
Covariance contribution 0.90
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.65
SVM decision value 0.21
SVM RNA-class probability 0.634255
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20978519 114 - 23771897
GAGGGAUAUAAUGAGACUAUUGGCAGGGUUCAUGGCUUGAUCCCUUGAUCAGGACACGGAAACGGACAUGAUAUAGCAAUUAAU------CAUAAGCAGGAUGUUACUCUCGUAUAAGAA
(((((.....((((....((((.(.....(((((.(((((((....)))))))...((....))..)))))....)))))...)------))).(((.....))).)))))......... ( -27.30)
>DroSim_CAF1 3415 112 - 1
GAGGGAUAUAAUGAGACUAUUUACGGGGU--------UGAUCCCUUGAUCAGGACACGGAAACGGACAUGAUAUAGCAGUUUAUUCCCAGCGUAAGCAGGAAGUUAGUCUCGUAUAAGAA
..........(((((((((.....((((.--------.(((..((..((((.....((....))....))))..))..)))...)))).((....)).......)))))))))....... ( -30.30)
>DroYak_CAF1 1867 120 - 1
GGGGGAUAUAAUGGGACUAUUCAAAGGGUUUAUGGGUUGAUCCCUGGAUCAGGACACGGAAACGGACAUGAUAGAGCAAUUUAUCGCUUGCGUAAGCAGGAAGUUAGUCUUGUAUAAGAA
.((((((.((((.(((((........)))))....))))))))))....((((((.((....))(((..((((((....)))))).(((((....)))))..))).))))))........ ( -37.40)
>consensus
GAGGGAUAUAAUGAGACUAUUCACAGGGUU_AUGG_UUGAUCCCUUGAUCAGGACACGGAAACGGACAUGAUAUAGCAAUUUAU__C__GCGUAAGCAGGAAGUUAGUCUCGUAUAAGAA
..........(((((((((.....((((.(((.....))).))))..((((.....((....))....)))).................((....)).......)))))))))....... (-20.74 = -21.63 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:04 2006