Locus 7830

Sequence ID 3L_DroMel_CAF1
Location 20,977,582 – 20,977,702
Length 120
Max. P 0.808864
window12744

overview

Window 4

Location 20,977,582 – 20,977,702
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 82.78
Mean single sequence MFE -25.93
Consensus MFE -21.09
Energy contribution -21.65
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.85
Structure conservation index 0.81
SVM decision value 0.64
SVM RNA-class probability 0.808864
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20977582 120 + 23771897
UCUCAUUUCCCAACUCUCAUUCUCAUCUCACAUUCAGAUGCAUCCUCGAAAACCUCCGCCCUGCAAUCCGCAAUCCGUGGGAUGAUGUGAGACUAUGCCAAAAGGGAGCAAAUCCCAGCA
..............((((((..(((((((((((((.((((((....((........))...))).))).).)))..))))))))).))))))...........((((.....)))).... ( -28.70)
>DroSim_CAF1 2458 119 + 1
UCUCAUUUCUCAACACUCAUUCUCAUCUCGCAUUCAGAUGCAUCCUCGAAAACCUCCGC-CUGCAAUCCGCAAUCCGUGGGAUGAUGUGAGACUAUGCCAAAAGGGAGCAAAUCCCAGCA
...............(((((..(((((((((.(((((.......)).))).........-.(((.....)))....))))))))).)))))............((((.....)))).... ( -27.40)
>DroYak_CAF1 927 96 + 1
----------------UCAUUCUCAUCUUGCAUUCAGAUGCAUCCUCGAAAACCUCCGCCCUGCAAUC--------UUGCGAUGAUGUGAGACUAUGCCAAAAGGGAACAAAUCCCAGCA
----------------...(((.(((((((((...(((((((....((........))...))).)))--------)))))).)))).)))............((((.....)))).... ( -21.70)
>consensus
UCUCAUUUC_CAAC_CUCAUUCUCAUCUCGCAUUCAGAUGCAUCCUCGAAAACCUCCGCCCUGCAAUCCGCAAUCCGUGGGAUGAUGUGAGACUAUGCCAAAAGGGAGCAAAUCCCAGCA
...............(((((..(((((((((.....((((((....((........))...))).)))........))))))))).)))))............((((.....)))).... (-21.09 = -21.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:03 2006