Locus 7829

Sequence ID 3L_DroMel_CAF1
Location 20,977,227 – 20,977,342
Length 115
Max. P 0.618150
window12743

overview

Window 3

Location 20,977,227 – 20,977,342
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.92
Mean single sequence MFE -37.18
Consensus MFE -26.90
Energy contribution -26.35
Covariance contribution -0.54
Combinations/Pair 1.24
Mean z-score -1.95
Structure conservation index 0.72
SVM decision value 0.17
SVM RNA-class probability 0.618150
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20977227 115 - 23771897
UGUGGGGGCGCUUGCUGGCUUAGUUGAGCGAAGUAUCCAAUGUUUUACUUUUCAAUUGGUCG-----GCCUGCUAAUGCGCCAAACAUGAAAUUCAAAUUCCAAGUUGGAGUUGGUGAAA
.(((..(((((..((.(((((((((((..((((((..........)))))))))))))...)-----))).))....)))))...)))....((((((((((.....))))))..)))). ( -36.30)
>DroSim_CAF1 2122 118 - 1
UGUGGGGGCGUUUGCUGGCUUAGUUGGCCGCAGUUUCCAAUGUUUUACUUUUCAAUUGGUCGG--CGGCCUGCUAAUGCGCCAAACACGCAUCUCUAAUUCCAAUUUGGAGUUAGUGAGA
.(((..((((....)..(((((((.((((((.....(((((.............)))))...)--))))).))))).)))))...)))...((.((((((((.....)))))))).)).. ( -45.02)
>DroYak_CAF1 585 120 - 1
UGUGGGGGCGCUUGCUGGCUUAGUUACCCUCAGUUUCCAAUGCUUUACUUUUCAAUUGGUCGGGUAGGCAUGUUAAUGCGCCAAACACGAAUUUUUAAUUUCAAGUUGGAGUUAGUAAAA
.(((..(((((..((..(((....(((((.......(((((.............)))))..))))))))..))....)))))...)))......((((((((.....))))))))..... ( -30.22)
>consensus
UGUGGGGGCGCUUGCUGGCUUAGUUGACCGCAGUUUCCAAUGUUUUACUUUUCAAUUGGUCGG___GGCCUGCUAAUGCGCCAAACACGAAUUUCUAAUUCCAAGUUGGAGUUAGUGAAA
.(((..(((((..((.(((...(.....).......(((((.............)))))........))).))....)))))...)))...((.((((((((.....)))))))).)).. (-26.90 = -26.35 +  -0.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:02 2006