Locus 7828

Sequence ID 3L_DroMel_CAF1
Location 20,964,038 – 20,964,135
Length 97
Max. P 0.570506
window12742

overview

Window 2

Location 20,964,038 – 20,964,135
Length 97
Sequences 3
Columns 106
Reading direction reverse
Mean pairwise identity 83.23
Mean single sequence MFE -26.80
Consensus MFE -17.24
Energy contribution -19.13
Covariance contribution 1.89
Combinations/Pair 1.08
Mean z-score -1.98
Structure conservation index 0.64
SVM decision value 0.07
SVM RNA-class probability 0.570506
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20964038 97 - 23771897
AUUGAUUGUGACGAUAUUUUUUUUGGAAAAUUAUUGGCUGCAAAUUGGGACUCUUGCCUUGUAUUUCAAGGCUGCGAAAAAA---------AUCUUACAGUCUCGA
...((((((((.(((..((((((((........(((....)))............((((((.....))))))..))))))))---------))))))))))).... ( -22.60)
>DroSec_CAF1 212151 104 - 1
UUUGAUUGUGACGUUGUU--UUUUGGAAAAUUGUGGGUUGCAAAUUGGGACUCUAGCCUUGUAUUUUGAGGCUGUGAACCAAAGUAAUGUAAUACAACAGUCUCGA
...((((((.((((((..--((((((........(((((.(.....).)))))((((((((.....))))))))....))))))))))))......)))))).... ( -28.00)
>DroSim_CAF1 209010 104 - 1
UUUGAUUGUGACGUUGUU--UUUUGGAAAAUUGUGGGUUGCAAAUUGGGACUCUAGCCUUGUAUUUUGAGGCUGUGAACCAAAGUAAUGUCAUACAACAGUCUCGA
...(((((((((((((..--((((((........(((((.(.....).)))))((((((((.....))))))))....))))))))))))).....)))))).... ( -29.80)
>consensus
UUUGAUUGUGACGUUGUU__UUUUGGAAAAUUGUGGGUUGCAAAUUGGGACUCUAGCCUUGUAUUUUGAGGCUGUGAACCAAAGUAAUGU_AUACAACAGUCUCGA
...((((((...........((((((........(((((.(.....).)))))((((((((.....))))))))....))))))............)))))).... (-17.24 = -19.13 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:58:01 2006