Locus 7826

Sequence ID 3L_DroMel_CAF1
Location 20,961,867 – 20,961,966
Length 99
Max. P 0.533718
window12739

overview

Window 9

Location 20,961,867 – 20,961,966
Length 99
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 77.99
Mean single sequence MFE -27.92
Consensus MFE -16.78
Energy contribution -17.03
Covariance contribution 0.25
Combinations/Pair 1.17
Mean z-score -1.43
Structure conservation index 0.60
SVM decision value 0.00
SVM RNA-class probability 0.533718
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20961867 99 + 23771897
AUUCCA-UGACACUGCGUGGGGCAAUAAAAACAAACAGAACG---------CUUGGCGGCCACCUGAGAGCGGAGCAGCGACCAACUGUAAAAGUGGGCCGCCCGGGAA
.(((((-((......)))))))....................---------((.(((((((.(((....).)).((((.......)))).......))))))).))... ( -28.40)
>DroPse_CAF1 218778 85 + 1
AUUCCA-UGACAAAGCGUGGGGCUAUAAAAACAAACAGAUUU---------CUUGGCGGCCGCUUG--------------AACAACUGUAAAAGUGGGCCGCCAGCAAA
..((((-((......))))))(((............((....---------)).(((((((((((.--------------.((....))..)))).))))))))))... ( -28.30)
>DroEre_CAF1 211471 99 + 1
AUUCCA-UGACACUGCGUGGGGCAAUAAAAACAAACAGAACG---------CUUGGUGGCCACCUGAGAGCGGAGCAGCGACCAACUGUAAAAGUGGGACGCCCGGGAA
.((((.-...(((...)))((((.................((---------((((((....)))...))))).........((.(((.....))).))..)))))))). ( -25.90)
>DroYak_CAF1 225022 99 + 1
AUUCCA-UGACACUGCGUGGGGCAAUAAAAACAAACAGAACG---------CCUGGCGGCCACCUGAGAGCGGAGCAGCGACCAACUGUAAAAGUGGGCCGCCCGGGAA
.(((((-((......)))))))....................---------((.(((((((.(((....).)).((((.......)))).......))))))).))... ( -30.30)
>DroAna_CAF1 205961 105 + 1
GACCCACCGACAUUGCGUGGGGCAAUAAAAACAAACAGAACGAGCGCUUGGAUUGGCGGCCUCCAGUGAGCGA----ACGAACAACUGUAAAAGUGGGACGCCACCGAA
..(((((....(((((.....)))))........((((..((..(((((..(((((......)))))))))).----.)).....))))....)))))........... ( -26.30)
>DroPer_CAF1 219605 85 + 1
AUUCCA-UGACAAAGCGUGGGGCUAUAAAAACAAACAGAUUU---------CUUGGCGGCCGCUUG--------------AACAACUGUAAAAGUGGGCCGCCAGCAAA
..((((-((......))))))(((............((....---------)).(((((((((((.--------------.((....))..)))).))))))))))... ( -28.30)
>consensus
AUUCCA_UGACACUGCGUGGGGCAAUAAAAACAAACAGAACG_________CUUGGCGGCCACCUGAGAGCGG____GCGAACAACUGUAAAAGUGGGCCGCCAGCGAA
..((((.((......)))))).................................(((((((........((......)).....(((.....))).)))))))...... (-16.78 = -17.03 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:58 2006