Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,948,467 – 20,948,571 |
Length | 104 |
Max. P | 0.768226 |
Location | 20,948,467 – 20,948,571 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 75.34 |
Mean single sequence MFE | -21.22 |
Consensus MFE | -11.32 |
Energy contribution | -12.12 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.21 |
Mean z-score | -1.79 |
Structure conservation index | 0.53 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768226 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20948467 104 - 23771897 ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA-AAGAGUGGGCUUGAGAAUUG .........((((..............))))..(((((.((..(((((((((.....)))))))))(((((....)))))....-....))..)))))....... ( -24.34) >DroPse_CAF1 212658 88 - 1 A----GCAAU-GCAAAAAGAAAAAG-----AAGCAAAAAACGGAAGAAUGUGGAACAUU------UUUCGGUGGGCCGACGAGA-GAGCUAUGGCUAUGGCUAUG .----....(-((............-----..)))....((.((((((((.....))))------)))).)).(((((.(....-)(((....))).)))))... ( -19.74) >DroSec_CAF1 205147 104 - 1 ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA-AAGAGAGGGCUUGAGAAUUG .........((((..............))))..(((((..(..(((((((((.....)))))))))(((((....)))))....-....)...)))))....... ( -22.94) >DroSim_CAF1 202051 104 - 1 ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGAAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA-AAGAGAGGGCUUGAGAAUUG .........((((..............))))..(((((..(..(((((((((.....)))))))))(((((....)))))....-....)...)))))....... ( -22.84) >DroYak_CAF1 220077 105 - 1 ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGUGGAAAAAGAGAGGGCUUGAGAAUUG .........((((..............))))..(((((..(....)..((((.....))))((((..((((....))))..))))........)))))....... ( -20.34) >DroPer_CAF1 213524 82 - 1 A----GCAAU-GCAAAAAGAAAAAG-----AAGCAAAAAACGGAAGAAUGUGGAACAUU------UUUCGGUGGGCCGACGAGA-GAGCUAUGGCU------AUG (----((...-((............-----..((.....((.((((((((.....))))------)))).))..))...(....-).))....)))------... ( -17.10) >consensus ACACAAAAAUGGCAAAAACGAAGAGCAGCCAAGCAAGCAGCGGAAGAAUGUGGAACAUACAUUUUUGUCGUCAAGACGGCGGAA_AAGAGAGGGCUUGAGAAUUG .............................(((((......(....).................((((((((....))))))))..........)))))....... (-11.32 = -12.12 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:57 2006