Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,939,245 – 20,939,337 |
Length | 92 |
Max. P | 0.672323 |
Location | 20,939,245 – 20,939,337 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -35.00 |
Consensus MFE | -27.72 |
Energy contribution | -28.32 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -1.52 |
Structure conservation index | 0.79 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20939245 92 + 23771897 CACCUGCUCCUGCUAAAGCUGGCGCAUUGAGGGAAGCUGGACCCAAGGGAACCGCUGUUGCAGAUGGAGCUGCUCCCAUCGAUGAAGGAGCA .....((((((((((....)))).(((((((((((((.(..((....))..).)))...((((......)))))))).)))))).)))))). ( -38.10) >DroSec_CAF1 195534 92 + 1 CACCUGCUCCUGCUAAAGCUGGAGCAUUGAGGGAAGCUGGACCCAAGGGAACCGCUGUUGCAGAUGGAGCUGCGCCCAUGGAUGAAGGAGCA ..((((((((.((....)).))))).....(((.(((.(..((....))..).)))...((((......)))).)))........))).... ( -32.00) >DroSim_CAF1 192463 92 + 1 CACCUGCUCCUGCUAAAGCUGGAGCAUUGAGGGAAGCUGGACCCAAGGGAACCGCUGUUGCAGAUGGAGCUGCGCCCAUGGAUGAAGGAGCA ..((((((((.((....)).))))).....(((.(((.(..((....))..).)))...((((......)))).)))........))).... ( -32.00) >DroEre_CAF1 196664 92 + 1 CUCCUGCUCCUGCUCCAACUGGAGCAUUGAGGGAAGCUGGACCCAAGGGAACCGCUGUUGCAGAUGGAGCAGCGCCCAUUGAUGGAGGAGCA .....(((((((((((....)))))((..((((........)))..(((...(((((((.(....).)))))))))).)..))..)))))). ( -40.20) >DroYak_CAF1 201727 86 + 1 CUCCUGCUCCUGC------UGGAGCAUUGAGGGAAGCUGGACCCAAGGGAACCGCUGUUGCAGAUGGAGCUGCGCCCAUUGCUGGAGGAGCA ((((((((((...------.))))))....(((.(((.(..((....))..).)))...((((......)))).)))......))))..... ( -32.70) >consensus CACCUGCUCCUGCUAAAGCUGGAGCAUUGAGGGAAGCUGGACCCAAGGGAACCGCUGUUGCAGAUGGAGCUGCGCCCAUGGAUGAAGGAGCA .....(((((((((........))).....(((.(((.(..((....))..).)))...((((......)))).)))........)))))). (-27.72 = -28.32 + 0.60)
Location | 20,939,245 – 20,939,337 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -31.86 |
Consensus MFE | -26.30 |
Energy contribution | -26.70 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.42 |
Structure conservation index | 0.83 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.672323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20939245 92 - 23771897 UGCUCCUUCAUCGAUGGGAGCAGCUCCAUCUGCAACAGCGGUUCCCUUGGGUCCAGCUUCCCUCAAUGCGCCAGCUUUAGCAGGAGCAGGUG (((((((........)))))))(((((...(((...((((((......(((........))).......))).)))...))))))))..... ( -32.22) >DroSec_CAF1 195534 92 - 1 UGCUCCUUCAUCCAUGGGCGCAGCUCCAUCUGCAACAGCGGUUCCCUUGGGUCCAGCUUCCCUCAAUGCUCCAGCUUUAGCAGGAGCAGGUG (((((((.......(((((((((......))))...(((((..((....)).)).))).........)).)))((....))))))))).... ( -29.80) >DroSim_CAF1 192463 92 - 1 UGCUCCUUCAUCCAUGGGCGCAGCUCCAUCUGCAACAGCGGUUCCCUUGGGUCCAGCUUCCCUCAAUGCUCCAGCUUUAGCAGGAGCAGGUG (((((((.......(((((((((......))))...(((((..((....)).)).))).........)).)))((....))))))))).... ( -29.80) >DroEre_CAF1 196664 92 - 1 UGCUCCUCCAUCAAUGGGCGCUGCUCCAUCUGCAACAGCGGUUCCCUUGGGUCCAGCUUCCCUCAAUGCUCCAGUUGGAGCAGGAGCAGGAG ((((((.........(((.((((.((((.((((....))))......))))..))))..)))....((((((....)))))))))))).... ( -36.70) >DroYak_CAF1 201727 86 - 1 UGCUCCUCCAGCAAUGGGCGCAGCUCCAUCUGCAACAGCGGUUCCCUUGGGUCCAGCUUCCCUCAAUGCUCCA------GCAGGAGCAGGAG .....(((((((..(((((.(((......((((....)))).....))).))))))))........((((((.------...)))))))))) ( -30.80) >consensus UGCUCCUUCAUCAAUGGGCGCAGCUCCAUCUGCAACAGCGGUUCCCUUGGGUCCAGCUUCCCUCAAUGCUCCAGCUUUAGCAGGAGCAGGUG (((((((.......(((((((((......))))...(((((..((....)).)).))).........)).)))........))))))).... (-26.30 = -26.70 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:56 2006