Locus 7823

Sequence ID 3L_DroMel_CAF1
Location 20,938,821 – 20,938,911
Length 90
Max. P 0.669396
window12735

overview

Window 5

Location 20,938,821 – 20,938,911
Length 90
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 89.59
Mean single sequence MFE -31.47
Consensus MFE -24.42
Energy contribution -24.04
Covariance contribution -0.38
Combinations/Pair 1.09
Mean z-score -1.66
Structure conservation index 0.78
SVM decision value 0.29
SVM RNA-class probability 0.669396
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20938821 90 + 23771897
GUGCAUAUGCAGGGUGCCUUUUGCAUGGGAUCCACAAAGUUCCAGAGCUUUUGGCGUUGC---------UGUUGCUGCUGGAUCUGCUGCUGCACCAGU
(((((...((((.((((.....)))).(((((((...(((..(((.((.....))....)---------))..)))..))))))).))))))))).... ( -32.80)
>DroSec_CAF1 195110 90 + 1
GUGCAUAUGCAGGGUGCUUUCUGCAUGGGAUCCACAAAGUUCCAGAGCUUUUGGCGUUGC---------UGUUGCUGCUGGAUCUGCUGCUGCACCAGU
((((((((((((((....)))))))))(((((((...(((..(((.((.....))....)---------))..)))..))))))).....))))).... ( -34.80)
>DroSim_CAF1 192039 90 + 1
GUGCAUAUGCAGGGUGCUUUCUGCAUGGGAUCCACAAAGUUCCAGAGCUUUUGGCGUUGC---------UGUUGCUGCUGGAUCUGCUGCUGCACCAGU
((((((((((((((....)))))))))(((((((...(((..(((.((.....))....)---------))..)))..))))))).....))))).... ( -34.80)
>DroWil_CAF1 256533 99 + 1
GUGCAUAUGCAGGGCGCCUUUUGCAUGGGAUCCACAAAUUUCCAAAGCUUUUGACGUUGCUGUUGUUGCUGUUGCUGCUGGAUUUGCUGUUGUACCAAU
(((((...(((((...((....((((((((.........))))).(((...(((((....)))))..)))..)))....)).)))))...))))).... ( -23.50)
>consensus
GUGCAUAUGCAGGGUGCCUUCUGCAUGGGAUCCACAAAGUUCCAGAGCUUUUGGCGUUGC_________UGUUGCUGCUGGAUCUGCUGCUGCACCAGU
((((((((((((((....)))))))))((((((((((((((....))).))))..((.((.............)).))))))))).....))))).... (-24.42 = -24.04 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:54 2006