Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,936,587 – 20,936,678 |
Length | 91 |
Max. P | 0.680789 |
Location | 20,936,587 – 20,936,678 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 88.28 |
Mean single sequence MFE | -22.53 |
Consensus MFE | -16.33 |
Energy contribution | -18.71 |
Covariance contribution | 2.38 |
Combinations/Pair | 1.04 |
Mean z-score | -1.76 |
Structure conservation index | 0.73 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.680789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20936587 91 - 23771897 AUUUGCAAAAGCUCGGUACUCGAUACUCUGUAUUCGAUACUGCAUUGAGUAUGAGUACUCAGUUAAAUACUUUGGUUUUGGUGCCGCAUGU ...(((...((((.(((((((.((((((((((........))))..))))))))))))).)))).........(((......))))))... ( -26.80) >DroSec_CAF1 192820 91 - 1 AUUUGCAAAUACUCGAUACUCGAUACUCUGUAUUCGAUACUGGAUUGAGUAUGAGUACUCAGUUCAAUACUUUGGUUUUGGUGCCGCAUGU ...(((...(((((.(((((((((.((..((((...)))).))))))))))))))))................(((......))))))... ( -22.60) >DroSim_CAF1 189756 91 - 1 ACUUGCAAAUACUCGGUACUCGAUACUCUGUAUUCGAUACUGGAUUGAGUAUGAGUACUCAGUUCAAUACUUUGGUUUUGGUGCCGCAUGU ((.(((....(((.(((((((.((((((...(((((....))))).))))))))))))).)))..........(((......)))))).)) ( -26.70) >DroEre_CAF1 193937 79 - 1 UUUUGCAAAUACUCGGUACUCGGUACUCUGUAUUCGAUACUGGAUUGAUU------------UUAAAUACUUUGGUUUUGGUGCCGCAUGU .............((((((.(((.(((..(((((((((.....)))))..------------....))))...))).)))))))))..... ( -14.00) >consensus AUUUGCAAAUACUCGGUACUCGAUACUCUGUAUUCGAUACUGGAUUGAGUAUGAGUACUCAGUUAAAUACUUUGGUUUUGGUGCCGCAUGU .............((((((.(((.(((..(((((.......((((((((((....)))))))))))))))...))).)))))))))..... (-16.33 = -18.71 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:53 2006