Locus 782

Sequence ID 3L_DroMel_CAF1
Location 2,344,803 – 2,344,923
Length 120
Max. P 0.516424
window1201

overview

Window 1

Location 2,344,803 – 2,344,923
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.00
Mean single sequence MFE -36.26
Consensus MFE -28.65
Energy contribution -29.90
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.42
Structure conservation index 0.79
SVM decision value -0.03
SVM RNA-class probability 0.516424
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2344803 120 - 23771897
CCAUGCGCGAUGUUAUAAUCAUAUUGCCCAGCAGGAGCAUCAUGGUCUCCCAGUCCACCCAACUCACAAUCGUUUCCAGAGUGGGCCUGCUCCCCAAAACGGUGAGCAGGGCGAGGGACA
...((((((((((.......)))))))...)))((((.((....))))))..((((.((((.(((.............)))))))(((((((.((.....)).))))))).....)))). ( -41.32)
>DroSec_CAF1 93895 120 - 1
CCAUGCGCGAUGUUAUUACCAUAUUGCCCAGCAGGAUCAUCAUGGACUCCCAGUCCACCCAACUCACUAUCGUUUCCACAGUGGGCCUGUUCCCCAAAACGGUGAGCAGGGCCAGGGACA
((.((((((((((.......)))))))...))))).......(((((.....)))))((((((........))).......(((.(((((((.((.....)).))))))).))))))... ( -39.20)
>DroEre_CAF1 100498 120 - 1
CCAUGCGCGAUGUCAUUAUCAUAUUGCCCAGCAGGAUCAUCAUGGUCUCCCAGUCCACCCAACUCACUAUCUUUUCUAGAGUGGGUCUAUCGCCCAAAACGGUGAGAAGGGCCAAGGACA
(((((.(((((((.......)))))))((....)).....))))).......((((.(((..((((((.(((.....))).(((((.....)))))....))))))..)))....)))). ( -36.50)
>DroYak_CAF1 97033 120 - 1
CCAUGCACGACGUCAUUAUCAUAUUGCCCAGCAGGAUCAUCAUGGUCUCCCAGUCCACCCAACUCACUAUCGUUUCCAGAUCGGGUCUGCUGCCCAAAACGGCGAGAAGGGCCAAGGACA
...........(((.........(((((((((((((((.....)))).(((.(((.....(((........)))....))).))).)))))(((......))).....))).))).))). ( -28.00)
>consensus
CCAUGCGCGAUGUCAUUAUCAUAUUGCCCAGCAGGAUCAUCAUGGUCUCCCAGUCCACCCAACUCACUAUCGUUUCCAGAGUGGGCCUGCUCCCCAAAACGGUGAGAAGGGCCAAGGACA
(((((.(((((((.......)))))))((....)).....))))).......((((.(((..(((((...(((((......((((.......))))))))))))))..)))....)))). (-28.65 = -29.90 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:01 2006