Locus 7819

Sequence ID 3L_DroMel_CAF1
Location 20,913,143 – 20,913,263
Length 120
Max. P 0.543300
window12727

overview

Window 7

Location 20,913,143 – 20,913,263
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 90.83
Mean single sequence MFE -32.58
Consensus MFE -25.71
Energy contribution -26.77
Covariance contribution 1.06
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.79
SVM decision value 0.02
SVM RNA-class probability 0.543300
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20913143 120 - 23771897
UAUGGAGGGGAACUGAAAGUUUGCCUUGGCCAUGUCAUCUAUGACUGCUUGGACCACUUCCUCGUGCUCUUUAUAGUUUUCACCCUUGAUUCUGAAACAGAUUCGAUUUAGAUCUCCUCU
...((((((((.(((((((((((..(..(....((((....(((..(((.(((.(((......))).)))....)))..)))....)))).)..)..))))))...))))).)))))))) ( -30.90)
>DroSim_CAF1 166255 120 - 1
UAUGGAGGGGAACUGAAAGUUUGCCUUGGCCAUGGCAUCUAUGCCUGCUUGCACCACUUCCUCGUGCUCUUUGUAGUUUUCAGCCUUGAUUCUGAAACAGAUUCGAUUUAGAUCUCUUCU
...((((((((.(((((((..((((........)))).......((((..((((.........)))).....)))))))))))..((((.((((...)))).))))......)))))))) ( -31.40)
>DroEre_CAF1 170246 120 - 1
AGUUGAGGGGAACUGAAAGUUUCCAUUGGCCAUGGCAUCUAUGCCUGCUUGGACCACUUCCUCAUGCUCCUUGUAGUUCUUAGCCUUGAUUCUGAAACAGGUUCGAUUUAGAACUGCUCU
(((((((((((((.....))))))..((((((.((((....))))....))).)))....)))).)))....((((((((.....((((..(((...)))..))))...))))))))... ( -37.00)
>DroYak_CAF1 172031 120 - 1
AGUUGAGGGGAACUGAAAGUUUCCAUUGGCUAUGGCAUCUAUGCCUGCUUGGACCACUUCCUCGUGCUCUUUGUAGUUUUCAGCCUUGAUUCUGAAACAGUUUCGAUUUAGAUCUGUUCU
....(((.(((.(((((..........((((..((((....))))(((..(((.(((......))).)))..)))......))))((((..(((...)))..))))))))).))).))). ( -31.00)
>consensus
AAUGGAGGGGAACUGAAAGUUUCCAUUGGCCAUGGCAUCUAUGCCUGCUUGGACCACUUCCUCGUGCUCUUUGUAGUUUUCAGCCUUGAUUCUGAAACAGAUUCGAUUUAGAUCUCCUCU
....(((((((.(((((..........(((...((((....))))(((..(((.(((......))).)))..))).......)))((((.((((...)))).))))))))).))))))). (-25.71 = -26.77 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:47 2006