Locus 7817

Sequence ID 3L_DroMel_CAF1
Location 20,904,100 – 20,904,213
Length 113
Max. P 0.546829
window12722

overview

Window 2

Location 20,904,100 – 20,904,213
Length 113
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 85.81
Mean single sequence MFE -38.25
Consensus MFE -30.02
Energy contribution -30.25
Covariance contribution 0.23
Combinations/Pair 1.29
Mean z-score -1.88
Structure conservation index 0.78
SVM decision value 0.03
SVM RNA-class probability 0.546829
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20904100 113 + 23771897
CCACCCCCAUUGUCCAGUCAAUGGAGUUCUUCGUUUCGAUCUCUUCGAAGUGGCGAAUUUUGGCCAGGAAAGUUCGAAUCUCGAUUGGGGAUCGGAC--CUUGGGCAAGCCAUCA
......((((((......))))))(((((.(((((((((.....))))))))).)))))(((.(((((...((((((.((((.....))))))))))--))))).)))....... ( -36.60)
>DroSec_CAF1 160573 113 + 1
CCACUCCCAUUGUCCAGUCAAUGGAGUUCUUUGCUUCGAUAUCUUCGAAGUGCCGAAUUUUAGCCAGGAAAGUUCGAAUCUCGAUUGGGGAUCGGAC--CUUGGGCAAGCCAUCA
.........((((((((((..((((((((..((((((((.....))))))))..)))))))).....))..((((((.((((.....))))))))))--.))))))))....... ( -34.20)
>DroSim_CAF1 157067 113 + 1
CCACCCCCAUUGUCCAGUCAAUGGAGUUCUUCGCUUCGAUAUCUUCGAAGUGGCGAAUUUUAGCCAGGAAGGUUCGAAUCUCGAUUGGGGAUCGGAC--CUUGGGCAAGCCGUCA
......((((((......))))))(((((.(((((((((.....))))))))).)))))...(((...(((((((((.((((.....))))))))))--))).)))......... ( -44.00)
>DroEre_CAF1 160339 113 + 1
CCACCCCCAUCGUCCAGUCAAUCGAGUUGUUCGCUUCGAUUUCUUCGAAGUGACGAAUUUUGGCCAGGAAAGUGCGAAUCUCGAUUGGGGAUCGCAC--CUUGGGCAAUCCAUCA
.....((((...(((.(((((.....((((.((((((((.....))))))))))))...)))))..)))..((((((.((((.....))))))))))--..)))).......... ( -39.20)
>DroYak_CAF1 161400 113 + 1
CCACCCCCAUUGUCCAGUCAAUAGAGUUCUUCGUUUCGAUUUCUUCGAAGUGACGAAUUUUGGCCAAGAAAGUUCGAAUCUCAAUUGGGGAUCGGAC--CUUGGGCAAGCCAUCA
.........(((((((((((...((((((.(((((((((.....))))))))).)))))))))).......((((((.((((....)))).))))))--..)))))))....... ( -34.40)
>DroAna_CAF1 157076 113 + 1
CGACCUGCAGAGUCCAGUCCCGGGAGGUGUUCGCUUCGAUCUCCUCGAAGUGACGAAUUUUGGCCAGAAAGGUUCUCACCUCGAC--GGGUUCAGAUGGGUUGGGUAUCUCAUCA
.((..(((..(..(((..((((.((((((.(((((((((.....))))))))).(((((((.......))))))).))))))..)--)))......)))..)..)))..)).... ( -41.10)
>consensus
CCACCCCCAUUGUCCAGUCAAUGGAGUUCUUCGCUUCGAUAUCUUCGAAGUGACGAAUUUUGGCCAGGAAAGUUCGAAUCUCGAUUGGGGAUCGGAC__CUUGGGCAAGCCAUCA
.........((((((((....((((((((.(((((((((.....))))))))).)))))))).........((((((.((((....)))).))))))...))))))))....... (-30.02 = -30.25 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:43 2006