Locus 7813

Sequence ID 3L_DroMel_CAF1
Location 20,893,861 – 20,893,981
Length 120
Max. P 0.681954
window12714

overview

Window 4

Location 20,893,861 – 20,893,981
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 91.25
Mean single sequence MFE -30.06
Consensus MFE -22.86
Energy contribution -23.26
Covariance contribution 0.40
Combinations/Pair 1.13
Mean z-score -1.74
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.681954
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20893861 120 - 23771897
GAUUGGGAUUGGUGUUGAACAGGGGAAAGACAUAUAGAUCCUUUUUGAAAGCAUAAAUAUCCUUAAUGCUUGAAGGAUCAUCGCUCUCUCCCAAAAACUCAAGUCUGAUCUUAUCGGUCA
(((((((((..(..((((....((((.(((......((((((((....((((((...........)))))))))))))).....))).))))......))))..)..))))...))))). ( -34.10)
>DroSec_CAF1 150505 120 - 1
UAUUGGGAUUGGUGUUGAACACCGGAAAUACAUACAGAUCCUUUUUGAAAGCAUAAAUGUCCUUAAUGCUUGAAGGAUCAUCACUCUCUCCCAAAAACUCAAGCUUGAUCUUUUCGGUCA
..((((((((((((.....))))))...........((((((((....((((((...........)))))))))))))).........))))))...........(((((.....))))) ( -31.80)
>DroSim_CAF1 146975 120 - 1
UAUUGGGAUUGGUGUUGAACACCGGAAAUACAUACAGAUCCUUUUUGAAAGCAUAAAUAUCCUUAAUGCUUGAAGGAUCAUCACUCUCUCCCAAAAACUCAAGCUUGAUCUUCUCGGUCA
..((((((((((((.....))))))...........((((((((....((((((...........)))))))))))))).........))))))...........(((((.....))))) ( -31.80)
>DroEre_CAF1 150380 120 - 1
GAUUGGGAUUGGUGUUGAACAGCGGAAAGACAUAUAGCGACUUCUUAAAGGCAUAAAUGUCCUUAAUGCUUGAAGGGUCAUCGCUCUCCCCCAAAAACUCAAGUCUGAUCUUAUCGGUCA
..(((((.(((.((.....)).)))..........(((((..((((..((((((...........))))))..))))...)))))....)))))........(.(((((...))))).). ( -25.10)
>DroYak_CAF1 151374 120 - 1
GAUUGGGAUUGGUGUUGAACAGCGGAAAGACAUAUAGAGACUUUUUAAAGGCAUAAAUAUCCUUAAUGCUUGAAGGGUCAUCGCUCUCUCCUAAAAACUCAAGUCUGAUCUUAUCGGUCA
(((((((((..(..((((.....(((.(((......(((((((((((..(((((...........)))))))))))))).))..))).))).......))))..)..))))...))))). ( -27.50)
>consensus
GAUUGGGAUUGGUGUUGAACAGCGGAAAGACAUAUAGAUCCUUUUUGAAAGCAUAAAUAUCCUUAAUGCUUGAAGGAUCAUCGCUCUCUCCCAAAAACUCAAGUCUGAUCUUAUCGGUCA
..((((((..((((.........(......).....((((((((....((((((...........))))))))))))))..))))...))))))...........(((((.....))))) (-22.86 = -23.26 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:35 2006