Locus 781

Sequence ID 3L_DroMel_CAF1
Location 2,343,298 – 2,343,388
Length 90
Max. P 0.526678
window1200

overview

Window 0

Location 2,343,298 – 2,343,388
Length 90
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 85.61
Mean single sequence MFE -22.95
Consensus MFE -14.12
Energy contribution -13.62
Covariance contribution -0.50
Combinations/Pair 1.28
Mean z-score -1.86
Structure conservation index 0.62
SVM decision value -0.01
SVM RNA-class probability 0.526678
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2343298 90 + 23771897
UCGGG-GACAGGGAAAAUCGAAAAAUUACCCAGCUUGA-GGCGAAAGAUGCAAGUAAAGUUGCUGAAUGUAUUGAAGAUACUUUUCGCCCAA
..(((-(((.(((...............))).(((((.-..(....)...)))))...)))...(((.(((((...)))))..))).))).. ( -20.16)
>DroSec_CAF1 92392 91 + 1
UCGGG-GACAGGGAAAAUCGAAAAAUGACCCAGCUUGAAGGCGAAAGAUGCAAGUAAAGUUGCUGAAAGUAUUGAAGAUACUUUUCGCCCAC
..((.-(((.(((...............))).(((((....(....)...)))))...)))((.(((((((((...))))))))).)))).. ( -21.56)
>DroEre_CAF1 97719 89 + 1
UCGG--GGCAGGAAAAAACGAUAAAUUACCCAGCUUGAUGGCGAAAGAUUCAAGUGAAGUUGCUGAAAGUAUUGAAGAUAUUU-UUGCCCAC
...(--((((((((....(((((..((...((((((.((..(....)......)).))))))...))..)))))......)))-)))))).. ( -22.60)
>DroYak_CAF1 95487 92 + 1
ACGGGGGGCGGAGAGAAAAGAAAAAUUACCCAGCUUGAAGGCGAAAGACUCAAGUGAAGUUGCUGAAAGUAUUAGAGAUAUUCUUCGCCCAC
.....((((((((((.................((((((...(....)..))))))...((..((((.....))))..)).)))))))))).. ( -27.50)
>consensus
UCGGG_GACAGGGAAAAACGAAAAAUUACCCAGCUUGAAGGCGAAAGAUGCAAGUAAAGUUGCUGAAAGUAUUGAAGAUACUUUUCGCCCAC
..(((.((.(((....................((((((...(....)..)))))).....(((.....))).........))).)).))).. (-14.12 = -13.62 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:00 2006