| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,883,935 – 20,884,045 |
| Length | 110 |
| Max. P | 0.999134 |
| Location | 20,883,935 – 20,884,045 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.60 |
| Mean single sequence MFE | -23.74 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.49 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.95 |
| Structure conservation index | 0.63 |
| SVM decision value | 3.39 |
| SVM RNA-class probability | 0.999134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20883935 110 + 23771897 CGCUCUUUCGCCUGGCUUCCCUACCCUGCCCACACAGGGAAGCCUACACACUCUUAAAUCAUGCACUUGGAACAAAAAGUGCAAGCAU-UAAACUUUAUUUAAACAUUCAA .(((.........(((((((((.............))))))))).................(((((((........))))))))))..-...................... ( -27.52) >DroSec_CAF1 140550 107 + 1 CGCUCUUUCGCCUGGCUUCCUUACCCUGCCCACACAGGGAAGCCUACACACUCUAAAAUCAUACACUUGGAACAAUAAGGGCGAGCUA-UAAACAUUAUUUAAACAUU--- .((((....(((((((((.....(((((......)))))))))).......(((((..........))))).......))))))))..-...................--- ( -24.20) >DroYak_CAF1 141220 92 + 1 CGCUCUUUCGCCUGGCUUCUUUACCCUGCCCACACAGGGAAGCCUACACACACUAAAAAAUUACACUCGGAAUAAUAAGUGGAAGAAUUUAG------------------- ...((((((((..(((((.....(((((......))))))))))...................(....).........))))))))......------------------- ( -19.50) >consensus CGCUCUUUCGCCUGGCUUCCUUACCCUGCCCACACAGGGAAGCCUACACACUCUAAAAUCAUACACUUGGAACAAUAAGUGCAAGCAU_UAAAC_UUAUUUAAACAUU___ .((......))..(((((((((.............)))))))))...................((((((......)))))).............................. (-14.93 = -15.49 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:25 2006