Locus 7806

Sequence ID 3L_DroMel_CAF1
Location 20,883,716 – 20,883,812
Length 96
Max. P 0.781288
window12703

overview

Window 3

Location 20,883,716 – 20,883,812
Length 96
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 78.43
Mean single sequence MFE -18.24
Consensus MFE -12.62
Energy contribution -13.26
Covariance contribution 0.64
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.69
SVM decision value 0.56
SVM RNA-class probability 0.781288
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20883716 96 + 23771897
UAGUUCAACUGACUUGGCAGCGCUCCAAAUGCGGUGACUUCUUGGCUAUGUCAUAU----AUACCCCCACUCCCCUCCUGACUACC-CUGCCACGCCCCAC
..............(((((((((.......)))(((((...........)))))..----..........................-))))))........ ( -16.80)
>DroSec_CAF1 140334 96 + 1
UAGCUCAACUGACUUGGCAGCGCUCCAAAUGCGGUGACUUCUUGGCUAUGUCAUAU----AUACACCCACUCCCCUCCUAACUACC-CUGCCACGCCCCAC
..............((((((.((.......))((((......((((...))))...----...))))...................-))))))........ ( -17.20)
>DroEre_CAF1 140364 100 + 1
UAGCUCAACUGACUUGGCAGCGCUCCAAAUGCGGUGACUUCUUGGCUAUGUCAUAUACAUAUACCCCCACUCCCCUCCCAACUACC-CUGCCACGCCCCAC
..............(((((((((.......)))(((((...........)))))................................-))))))........ ( -16.80)
>DroYak_CAF1 140999 101 + 1
UAGCUCAACUGACUUGGCAGCGCUCCAAAUGCGGUGACUUCUUGGCUAAGUCAUAUACAUAUAUCCCCACUCCCCUCCCAACUACCACUGCCACGCCCCAC
..............(((((((((.......)))(((((((.......))))))).................................))))))........ ( -18.70)
>DroPer_CAF1 155702 81 + 1
UUCCUUACCCAAGUUGGCAGGGCUCCCAAUUGGGAGACUCCUUUUCCA-GUCCU---------------CUUCUCU--UCUC-UCC-UUGCCAGGCCUCUC
.............(((((((((.((((....))))((((........)-)))..---------------.......--....-.))-)))))))....... ( -21.70)
>consensus
UAGCUCAACUGACUUGGCAGCGCUCCAAAUGCGGUGACUUCUUGGCUAUGUCAUAU____AUACCCCCACUCCCCUCCUAACUACC_CUGCCACGCCCCAC
..............(((((((((.......)))(((((...........))))).................................))))))........ (-12.62 = -13.26 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:24 2006