Locus 7805

Sequence ID 3L_DroMel_CAF1
Location 20,876,738 – 20,876,829
Length 91
Max. P 0.977899
window12702

overview

Window 2

Location 20,876,738 – 20,876,829
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 91.42
Mean single sequence MFE -24.23
Consensus MFE -20.49
Energy contribution -21.29
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.85
SVM decision value 1.80
SVM RNA-class probability 0.977899
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20876738 91 + 23771897
UCGGUUCAUGUUUUAUUUUUUUUUUCCUUUAUUUUUGUGACGUGGUGAUGUUGCUGCUUGGCUGCAAUGCCAGUCAGGAACGUCAAAUGAA
(((..(((((((..........................)))))))(((((((.(((.(((((......))))).))).)))))))..))). ( -24.57)
>DroSec_CAF1 133343 87 + 1
UCGGUUCAUGUUU----UUUUUCACCCUUUAUUUUUGUGACGUGGUGAUGUUGCUGCUUGGCUGCAAUGCCAGUCAGGAACGUCAAAUGGA
....(((((....----......((((.((((....)))).).)))((((((.(((.(((((......))))).))).))))))..))))) ( -25.00)
>DroSim_CAF1 135757 87 + 1
UCGGUUCAUGUUU----UUUUUUCCCCUUUAUUUUUGUGACGUGGUGAUGUUGCUGCUUGGCUGCAAUGCCAGUCAGGAACGUCAAAUGGA
((.(((((((((.----.....................)))))).(((((((.(((.(((((......))))).))).)))))))))).)) ( -24.75)
>DroEre_CAF1 133309 86 + 1
UCGGUUCAUGGUU----AUUUU-UUCCUUUAUUUUUGUGACGUGGUGAUGUGGCUGCUUGGCUGCAAUGGCAGUCAGGAACGUCAAAUGGA
.....(((..(..----((...-.......))..)..)))(((..((((((.....(((((((((....))))))))).)))))).))).. ( -23.70)
>DroYak_CAF1 133847 87 + 1
UCGGUUCAUGUUU----UUUUUUUUGUUUUACUUUUGUGACGUGGUGAUGUUGCUGCUUGGCUGCAAUGCCAGCGAGGAACGUCAAAUGGA
((.(((((((((.----.....................)))))).(((((((.(((((.(((......)))))).)).)))))))))).)) ( -23.15)
>consensus
UCGGUUCAUGUUU____UUUUUUUUCCUUUAUUUUUGUGACGUGGUGAUGUUGCUGCUUGGCUGCAAUGCCAGUCAGGAACGUCAAAUGGA
.....(((((((..........................)))))))(((((((.(((.(((((......))))).))).)))))))...... (-20.49 = -21.29 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:23 2006