| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,863,222 – 20,863,331 |
| Length | 109 |
| Max. P | 0.725499 |
| Location | 20,863,222 – 20,863,331 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.63 |
| Mean single sequence MFE | -33.52 |
| Consensus MFE | -20.31 |
| Energy contribution | -23.06 |
| Covariance contribution | 2.75 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20863222 109 + 23771897 CUAUGGGUGCAGUUCCCCUUUCGUUGAGGGGAUCCCCUUAAAGAUGAUAUUGGUAACGCGGGAAUUUACUUGGAUUCCGCAAAGGGGAGGCUCGAUAAAGAGAAAUUUA .(((.((.((...(((((((((.(((((((....))))))).)).............((((.(((((....))))))))).))))))).)))).)))............ ( -34.50) >DroSec_CAF1 119917 109 + 1 CUAUGGGUGCAGUUCCCCGUUCGUCGAGGGGAUCCCCUUGAAAAAGAUAUUGGUAACGCGGGAAUUUACUUGGAUUCCGAACAGGGGAGGCUCGAUAAAGAGAAAUUUG .(((.((.((...(((((((((.(((((((....)))))))...................(((((((....))))))))))).))))).)))).)))............ ( -36.20) >DroSim_CAF1 122310 87 + 1 CUAUGGGUGCAGUUCCCCGUUCGUCGAGGGGAUCCCCUUGAAUAAGAUAUUC----------------------CCCCAAAAAGGGGAAGCUCGAUAAAGAGAAAUUUG ..(((((........)))))((.(((((((....)))))))....))..(((----------------------(((......)))))).(((......)))....... ( -28.60) >DroEre_CAF1 120313 107 + 1 CCAUGGGUGCAGUUCCCUGUUCGUCGAGGGGAUCCCCUUAAAGAAGAUAUUGCUAGCGCGGGAAUUCACUGGGGUUCCAGCAAGGGG--GCUCGAUAAAGAGAAAUUCG .....((((.((((((((.(((...(((((....)))))...))).)....((....))))))))))))).(((((((......)))--))))................ ( -34.00) >DroYak_CAF1 118165 95 + 1 CUAUGGGUGCUGUUCCCUGU-AGUCGAGGGGAUCCCCUUA-GGAAGAUAUCGCUGACGCGGGAAUUCACUUGGGCUCCGGAAGGGGG------------AAGAAAUUCG ....(((((..((((((.((-.((((((((....)))))(-(((.....)).))))))))))))).)))))...((((....))))(------------((....))). ( -34.30) >consensus CUAUGGGUGCAGUUCCCCGUUCGUCGAGGGGAUCCCCUUAAAGAAGAUAUUGCUAACGCGGGAAUUCACUUGGAUUCCGAAAAGGGGA_GCUCGAUAAAGAGAAAUUUG ...(((((....((((((.....(((((((....)))))))...................(((((((....))))))).....)))))))))))............... (-20.31 = -23.06 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:18 2006