| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,859,090 – 20,859,182 |
| Length | 92 |
| Max. P | 0.972395 |
| Location | 20,859,090 – 20,859,182 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.34 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -15.51 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20859090 92 + 23771897 ----GAGUA--------CCGCACCGUCUCUGAUCCAUAUCGACCGAAAGUUAACGCUUUAGCG-GAUUAAACAUGGCUUUUAGCGUUAAUUAACAACGAAUUUUC--------------- ----(((.(--------(......))))).........(((......((((((((((..(((.-(........).)))...)))))))))).....)))......--------------- ( -17.20) >DroVir_CAF1 142544 90 + 1 -------------CCCAUGGU-AACUCUCUGAUCCAUAUCGU-UAAAAGUUAACGCUUUAGCGGGCCUUAACAUGGCUUUUAGCGUUAAUUAACAACGAAUUUUU--------------- -------------...((((.-...........)))).((((-(...((((((((((.....(((((.......)))))..))))))))))...)))))......--------------- ( -23.10) >DroGri_CAF1 129679 101 + 1 GCUUGUCUGCCAGCCUAUGGC-GACUCUCUGAUCCAUAUCGU-UAAAAGUUAACGCUUUAGCG-GCCUUAACAUGGCUUUUAGCGUUAAUUAACAACGAAUUUU---------------- ....(((.((((.....))))-))).............((((-(...((((((((((.....(-(((.......))))...))))))))))...))))).....---------------- ( -29.90) >DroYak_CAF1 113991 92 + 1 ----GUGUA--------CCGCUCCGACUCUGAUCCAUAUCGGCCGAAAGUUAACGCUUUAGCG-GAUUAAACAUGGCUUUUAGCGUUAAUUAACAACGAAUUUUC--------------- ----.(((.--------.((..((((............)))).))..((((((((((..(((.-(........).)))...)))))))))).)))..........--------------- ( -17.90) >DroMoj_CAF1 137388 111 + 1 ----GCCUGC---CCCAUGGA-AACUCUCUGAUCCAUAUCGU-UAAAAGUUAACGCUUUAGCGGGCCUUAACAUGGCUUUUAGCGUUAAUUAACAACGAAUUUUGUUUGGCUUUUCUUCA ----(((.((---...(((((-..........))))).((((-(...((((((((((.....(((((.......)))))..))))))))))...))))).....))..)))......... ( -29.10) >DroAna_CAF1 116725 86 + 1 -----------------CGGCCAUGUCGCUGAUCCAUAUCGUU-UAAAGUUAACGCUUUAGUG-GCUUAAACAUGGCUUUUAGCGUUAAUUAACAACGAAUUUUC--------------- -----------------((((......)))).......(((((-...((((((((((.....(-(((.......))))...))))))))))...)))))......--------------- ( -23.00) >consensus ____G__U_________CGGC_AACUCUCUGAUCCAUAUCGU_UAAAAGUUAACGCUUUAGCG_GCCUAAACAUGGCUUUUAGCGUUAAUUAACAACGAAUUUUC_______________ ......................................((((.....((((((((((..(((.............)))...))))))))))....))))..................... (-15.51 = -15.70 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:13 2006