Locus 780

Sequence ID 3L_DroMel_CAF1
Location 2,341,836 – 2,341,948
Length 112
Max. P 0.538352
window1199

overview

Window 9

Location 2,341,836 – 2,341,948
Length 112
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 72.69
Mean single sequence MFE -31.56
Consensus MFE -14.30
Energy contribution -14.68
Covariance contribution 0.37
Combinations/Pair 1.31
Mean z-score -2.05
Structure conservation index 0.45
SVM decision value 0.01
SVM RNA-class probability 0.538352
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2341836 112 + 23771897
CAUAACCAUUAGUUCAUCCACAUCUUCACCUCGAAUGCCUGUAUAACUUGGUCCCAGUAUUCGUGGGAUUCAGAUUCCUUGGGUCUCAACAUUCCUUU-GGCC-CCUGAGCCGU
...........(((((.....((((((.((.(((((((.((.............))))))))).))))...)))).....(((((.............-))))-).)))))... ( -22.54)
>DroSec_CAF1 90939 112 + 1
CAUAACCAUUAGUUCAUCCACAUCUGCACCUCGAAUGCCUGGAUAACUGGAUCCCGGUAUCCGUGGGACUCAGGUUCCUUGGGUCUCGGCAUUCCUUU-GGCC-CCUGAGCCGU
................................(((((((.(((((.((((...)))))))))..((((((((((...)))))))))))))))))....-(((.-.....))).. ( -37.10)
>DroYak_CAF1 93955 104 + 1
CAUAACCAUUCGUCCAUCCACAUCUGCACCUUGGAUCCCUGU--------AUCCCCGGAUCCCUGGGGCUCAGGUUCCUUGGGUCCUGGCAUUCCAUU-GGCC-CCUGAGCCGU
............................((..((((((....--------......))))))..))((((((((..((.((((.........))))..-))..-)))))))).. ( -34.80)
>DroAna_CAF1 89048 88 + 1
CUU---CACUCAUUCA-CCACAUCUGCACCUUGGGC---------------UCCUGGGAUCCCUGGGA-------UCCUUGGGUGCCGGCAUUCCUUUUGGCUCACUGAGCCGU
...---..........-.....((.((((((.(((.---------------(((..((...))..)))-------.))).)))))).))..........(((((...))))).. ( -31.80)
>consensus
CAUAACCAUUAGUUCAUCCACAUCUGCACCUCGAAUGCCUGU________AUCCCGGGAUCCCUGGGACUCAGGUUCCUUGGGUCCCGGCAUUCCUUU_GGCC_CCUGAGCCGU
.....................................................((((.((((..(((((....)))))..)))).))))..........(((.......))).. (-14.30 = -14.68 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:59 2006