Locus 7799

Sequence ID 3L_DroMel_CAF1
Location 20,853,076 – 20,853,173
Length 97
Max. P 0.839735
window12691

overview

Window 1

Location 20,853,076 – 20,853,173
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 73.68
Mean single sequence MFE -24.10
Consensus MFE -12.04
Energy contribution -14.47
Covariance contribution 2.44
Combinations/Pair 1.36
Mean z-score -2.16
Structure conservation index 0.50
SVM decision value 0.75
SVM RNA-class probability 0.839735
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20853076 97 - 23771897
CACCCUGGGUGUACACUGGGGAGAA-AAUAGUAACUUUGCCUGAAAAGAAAAAGUAUUCCAUACGGUAAUGCAUUCAAUAUGAAGUGUACAUCCCAAA
.....(((((((((((((((.(((.-.........))).)))...........(((((((....)).)))))...........)))))))).)))).. ( -25.50)
>DroSec_CAF1 109806 97 - 1
CACCCUGGGUGUACACUGGGCGAAA-AUAGGGAGCUUUGCAUGAAAAGAAAAAGUAUUCCAUACGGUAAUGCAUUCCAUAUGAAGUGUACAUCUCAAA
.....((((((((((((........-(((.((((((((......)))).....(((((((....)).))))).)))).)))..)))))))))).)).. ( -24.10)
>DroSim_CAF1 112165 97 - 1
CACCCUGGGUGUACACUGGGCGAAA-AUAAGGAACUUUGCAUGAAAUGAAAUAGUAUUCUAUACGGUGAUGCCUUCCAUAUGAAGUGUACAUCUCAAA
.....((((((((((((........-(((.((((....((((.(......((((....))))....).)))).)))).)))..)))))))))).)).. ( -21.90)
>DroYak_CAF1 108046 77 - 1
CACCCUGGGUGUACACGGGGUGAAAAAUGAAGAACUUCGUCUGAAAAGAAAAGGUUGUUCACUCGGUAAUGCAUAUC---------------------
(((((((........))))))).....((((.(((((..(((....)))..))))).))))................--------------------- ( -24.90)
>consensus
CACCCUGGGUGUACACUGGGCGAAA_AUAAGGAACUUUGCAUGAAAAGAAAAAGUAUUCCAUACGGUAAUGCAUUCCAUAUGAAGUGUACAUCUCAAA
......((((((((((((((((((...........)))))))...........(((((((....)).)))))...........))))))))))).... (-12.04 = -14.47 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:12 2006