Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,832,157 – 20,832,262 |
Length | 105 |
Max. P | 0.827389 |
Location | 20,832,157 – 20,832,262 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 83.10 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -26.31 |
Energy contribution | -28.06 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.10 |
Mean z-score | -1.90 |
Structure conservation index | 0.73 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827389 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20832157 105 + 23771897 GUAGGGUUUGGGU---UUUUCGGGUGCUUGAGAUUGGAGAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCCUCCAUAUCCCAUCAUCCAUCG ...((((.((((.---.....(((((..((((((.(((.((((((.(((.............))))))))).))))))))).))))).......))))..)))).... ( -34.94) >DroEre_CAF1 88659 105 + 1 GCAGGGCUUGGGC---UUUUCGGGCGCUUGAGAUUGGAUAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCUCCCAGAUCCCAUCAUCCAUCG ...(((.(((((.---.....(((((..((((((.((((((((((.(((.............))))))))))))))))))).))))))))))..)))........... ( -38.62) >DroYak_CAF1 86122 105 + 1 GUAGGGUUAGUGU---UUUUCGGGCGCUUGAGAUUGGAUAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCCCCCAUAUCCCAUCAUCCAUCC ...(((...(((.---.....(((((..((((((.((((((((((.(((.............))))))))))))))))))).)))))..)))..)))........... ( -35.32) >DroAna_CAF1 88425 106 + 1 --AGAGUUGGGGGCAGAUAGUGGGGGCUUGAGAUUUUAGAGCAGUCUGUCAGACGUCAAAGAGCAGUUGCUAUUCGUUUCAACGCUCCGAGUAUCCCAUCAGCCGUAG --.(.((((..((..((((.(.((((((((((((.....(((((.((((.............)))))))))....))))))).))))).).))))))..))))).... ( -35.02) >consensus GUAGGGUUUGGGU___UUUUCGGGCGCUUGAGAUUGGAGAGCAGCCUGUCAGACGUCAAAAAGCAGUUGCUAUCCGUUUCACCGCCCCCCAUAUCCCAUCAUCCAUCG ...((((..(((.........(((((..((((((.(((((((((.((((.............))))))))))))))))))).))))).......)))...)))).... (-26.31 = -28.06 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:11 2006