Locus 7797

Sequence ID 3L_DroMel_CAF1
Location 20,828,105 – 20,828,215
Length 110
Max. P 0.877912
window12689

overview

Window 9

Location 20,828,105 – 20,828,215
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 81.44
Mean single sequence MFE -23.44
Consensus MFE -19.18
Energy contribution -19.58
Covariance contribution 0.40
Combinations/Pair 1.09
Mean z-score -1.86
Structure conservation index 0.82
SVM decision value 0.90
SVM RNA-class probability 0.877912
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20828105 110 + 23771897
AGUUAGCUUCCUAUCUUGUCCCUAAUAAAAACUAUUAUUUUUGGUGUAUAAGCCUGUACACAAUGGAAACCGAAAUCUUGCCCAUAAGGCAGCUUUCAACUUUCGGUUUC
.(((((....(......)...))))).................(((((((....)))))))....((((((((((..(((((.....)))))........)))))))))) ( -21.10)
>DroSec_CAF1 84363 110 + 1
UGCUAGCUUUCUUUGUUGAUCCUGGUAAUUCAUUUUAUUUUUAGUGUAUAAGCCUGUACACAAUGGAAACCGAAAUCUCGCCCAUAAGGCCGCUUUCAACUUUCGGUUUC
((((((...((......))..))))))................(((((((....)))))))....((((((((((....(((.....))).(....)...)))))))))) ( -24.70)
>DroSim_CAF1 84355 110 + 1
UGCUAGCUUUCUUUCUUGAUCCUGGUAAUUCAUUUUAUUUUUAGUGUAUAAGCCUGUACACAAUGGAAACCGAAAUCUCGCCCAUAAAGCAGCUUUCAACUUUCGGUUUC
((((((...((......))..))))))................(((((((....)))))))....((((((((((....((..........)).......)))))))))) ( -22.10)
>DroEre_CAF1 84703 103 + 1
CU------C-UCUUGUUGUUCCUUUCAACAACUAUAAAUUUUGGUGUAUAAGCCUGUACACAAUGGAAACCGAAAUCCUGCCCAUGAGGCAGCUUCCAACUUUCGGUUUC
..------.-....((((((......))))))...........(((((((....)))))))....((((((((((..(((((.....)))))........)))))))))) ( -27.40)
>DroYak_CAF1 82392 109 + 1
UGUUAUAUU-CUUUCUUGUUCUCUUUAAUAACUAUAAAUUUUAGUGUAAGAGCCUGUACACAAUGGAAACCGAAAUCCUGCCCAUGAGGCAGCUUUCCACUUUCGGUUUC
.........-..........(((((.....((((.......))))..))))).............((((((((((..(((((.....)))))........)))))))))) ( -21.90)
>consensus
UGCUAGCUU_CUUUCUUGUUCCUGGUAAUAACUAUUAUUUUUAGUGUAUAAGCCUGUACACAAUGGAAACCGAAAUCUUGCCCAUAAGGCAGCUUUCAACUUUCGGUUUC
...........................................(((((((....)))))))....((((((((((..(((((.....)))))........)))))))))) (-19.18 = -19.58 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:10 2006