Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,810,124 – 20,810,228 |
Length | 104 |
Max. P | 0.897481 |
Location | 20,810,124 – 20,810,228 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 89.25 |
Mean single sequence MFE | -42.32 |
Consensus MFE | -31.78 |
Energy contribution | -31.98 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.13 |
Mean z-score | -2.23 |
Structure conservation index | 0.75 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20810124 104 + 23771897 CAGGUGGGCGGCAGUUGUGGGCGUGGCCCUCUGGUACUUGC---GCC---AGU----ACAUGGCACUAGUGCAGUAGUUUGCAGCUGCCGUUGACACAGAUUUAAGCUCGCAAA ...(((((((((((((((((((...))))....(((((.(.---(((---(..----...)))).).)))))........)))))))))((....))........))))))... ( -43.60) >DroSec_CAF1 66572 104 + 1 CAGGUGGGCGGCAGUUGUGGGCGUGGCCCUCUGGUACUUGC---GCU---AGU----ACAUGGCACUAGUGCAGUAGUUUGCAGCUGCCGUUGACACAGAUUUAAGCUCGCAAA ...((((((((((((((..((((((.((....)))))((((---(((---(((----.......))))))))))..)))..))))))))((....))........))))))... ( -45.10) >DroSim_CAF1 65207 104 + 1 CAGGUGGGCGGCAGUUGUGGGCGUGGCCCUCUGGUACUUGC---GCU---AGU----ACAUGGCACUAGUGCAGUAGUUUGCAGCUGCCGUUGACACAGAUUUAAGCUCGCAAA ...((((((((((((((..((((((.((....)))))((((---(((---(((----.......))))))))))..)))..))))))))((....))........))))))... ( -45.10) >DroEre_CAF1 66771 113 + 1 CAGGUGGGCCGCAGCUGUGGGCGUGGCCCUCCGGUACCU-CUACACUAGUAGUAUGUACAAGCUACCAGUACAGUAGUUUGCAGCUGCCGUUGACACAGAUUUAAGCUCGCAAA ..((.(((((((.((.....))))))))).)).((((..-((((....))))...))))(((((((.......)))))))((((((...(((......)))...)))).))... ( -40.20) >DroYak_CAF1 63769 110 + 1 CAGGUGGGCCGCAGUUGUGGGCGUGGCCCUCUGGUACUUGCUAUACGAGUAGU----ACAUGGUAGCAGUACAGUAGUUUGCAGCUGCCGUUGACACAGAUUUAAGCUCGCAAA ...((((((.(((((((..(((...((...(((.((((((((((....)))))----)...)))).)))....)).)))..))))))).((....))........))))))... ( -37.60) >consensus CAGGUGGGCGGCAGUUGUGGGCGUGGCCCUCUGGUACUUGC___GCU___AGU____ACAUGGCACUAGUGCAGUAGUUUGCAGCUGCCGUUGACACAGAUUUAAGCUCGCAAA ...((((((((((((((..(((...((...(((((.((......((.....))........)).)))))....)).)))..))))))))((....))........))))))... (-31.78 = -31.98 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:02 2006