| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,808,412 – 20,808,506 |
| Length | 94 |
| Max. P | 0.549473 |
| Location | 20,808,412 – 20,808,506 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 81.42 |
| Mean single sequence MFE | -13.03 |
| Consensus MFE | -8.54 |
| Energy contribution | -8.43 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.549473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20808412 94 + 23771897 CUUGGCACUUGGCAACUUUUUUGCUUGUUAAGUUUUUAAUAAAAUAAGAGAUUCCUCAUUUCCCCCAAGCUUUCCCCAUUCCCUUUUCCCUGGC (((((.((((((((((......).)))))))))..............(((....))).......)))))............((........)). ( -14.70) >DroPse_CAF1 73595 81 + 1 GCUGCCACUUGGCAACUU-UUUCCUUGUUAAGUUUUUAAUAAAAUAAGAGAUUCCUCAUUUC------------CUCUUUCGCUCUUGCCCCAA ((((((....)))).(((-((...(((((((....)))))))...)))))............------------.......))........... ( -11.30) >DroSec_CAF1 64930 82 + 1 CUUGGCACUUGGCAACUUUUUUGCUUGUUAAGUUUUUAAUAAAAUAAGAGAUUCCUCAUUUC------------CCCAUUCCCUUUUCCUUGGC ..(((.((((((((((......).)))))))))..............(((....))).....------------.)))...((........)). ( -11.60) >DroSim_CAF1 63540 82 + 1 CUUGGCACUUGGCAACUUUUUUGCUUGUUAAGUUUUUAAUAAAAUAAGAGAUUCCUCAUUUC------------CCCAUUCCCUUUUCCCUGGC ..(((.((((((((((......).)))))))))..............(((....))).....------------.)))...((........)). ( -11.60) >DroEre_CAF1 65122 93 + 1 CUUGGCACUUGGCAACUU-UUUGCCAGUUAAGUUUUUAAUAAAAUAAGAGAUUCCUCAUUUCCCCCAAGCUUCUGCCAGCCCCUCUUCCCCGGC ..(((((.(((((((...-.)))))))....................(((....)))................)))))(((..........))) ( -17.70) >DroPer_CAF1 74063 81 + 1 GCUGCCACUUGGCAACUU-UUUCCUUGUUAAGUUUUUAAUAAAUUAAGAGAUUCCUCAUUUC------------CUCUUUCGCUCUUGCCCCAA ((((((....)))).(((-((...(((((((....)))))))...)))))............------------.......))........... ( -11.30) >consensus CUUGGCACUUGGCAACUU_UUUGCUUGUUAAGUUUUUAAUAAAAUAAGAGAUUCCUCAUUUC____________CCCAUUCCCUCUUCCCCGGC ...((.(((((((((.........)))))))))..............(((....)))........................))........... ( -8.54 = -8.43 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:01 2006