Locus 7792

Sequence ID 3L_DroMel_CAF1
Location 20,804,808 – 20,804,928
Length 120
Max. P 0.581755
window12680

overview

Window 0

Location 20,804,808 – 20,804,928
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -33.92
Consensus MFE -17.24
Energy contribution -18.30
Covariance contribution 1.06
Combinations/Pair 1.24
Mean z-score -2.11
Structure conservation index 0.51
SVM decision value 0.10
SVM RNA-class probability 0.581755
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20804808 120 - 23771897
AGAACAUUUGUGUGGAAAUUCCUGACGGAAAAUUCGCAAGAUGCAGUUUACCUGAAAUCCCAAGAGACAUCCUGCGUGGGAAGUCUCACAGGUGAUGUCGAAGAAAAACUCUUUGGGAUU
....(((((.((((((..((((....))))..)))))))))))(((.....))).((((((....((((((((..(((((....))))).)).))))))(((((.....))))))))))) ( -39.10)
>DroSec_CAF1 61322 120 - 1
AGAACAUUUGUGUUGAAAUUCCUGACGGAAAAUUCGCAAGAUGCAGUUUACCUGAAAUCCCAAGAGACAUCCUGCGUGGGAAGUCUCACAGGUGAUGUCGAAGAAAAACUCUUUGGGAUU
....((((((((......((((....))))....))).)))))(((.....))).((((((....((((((((..(((((....))))).)).))))))(((((.....))))))))))) ( -34.70)
>DroSim_CAF1 59915 120 - 1
AGAACAUUUGUGUUGAAAUUCCUGAUGGAAGAUUCGCCAGAUGCAGUUUACCUGAAAUCCCAAGAGACAUCCUGCGUGGGAAGUCUCACAGGUGACGUCAAAGAAAAACUCUUUGGGAUU
....((((((.((.(((.((((....))))..)))))))))))(((.....))).(((((((((((((.((((....)))).)))))...(....)................)))))))) ( -36.60)
>DroEre_CAF1 60797 120 - 1
AGAACAGUUGUACUGAAAUUCCUGAUGGAAAAUUCGCAAGAUGCAGUUUACCUGAAAUCGGAAAAGACAUCCUGCGUGGGAAGUUUCACAGGUGAUGUCGAGGAAAAUCUCUUUGGGAUU
....(((.((.((((...((((....))))...((....))..)))).)).))).((((......((((((((..(((((....))))).)).))))))(((......))).....)))) ( -29.40)
>DroYak_CAF1 58406 120 - 1
AGAAUAAUUUUAUUGAAAUUCCUGAAGGAAAAUUCGAAAGAUGUAUUUCACCUGAAGUCGUAAGAGACAUCCUGCGUGGGAAGUCUCACAGGUGCUGUAGAAGAAAAACUCUUUGGGAUU
...................(((..((((.....((....))(.(((..((((((...((....))(((.((((....)))).)))...))))))..))).)........))))..))).. ( -32.80)
>DroAna_CAF1 61190 97 - 1
CCAAAAUCCGCAUUGAUAGUCCUGU-----------CAGGAUGCAGUUCUCCU-------CGACAGACA---UGCGUGGGAAAUUGCACAGGUGAUGUCUUAGGACG--UCUGUUGGAUU
....((((((((((((((....)))-----------)))..(((((((..((.-------((.((....---)))).))..))))))).....((((((....))))--)))).)))))) ( -30.90)
>consensus
AGAACAUUUGUAUUGAAAUUCCUGACGGAAAAUUCGCAAGAUGCAGUUUACCUGAAAUCCCAAGAGACAUCCUGCGUGGGAAGUCUCACAGGUGAUGUCGAAGAAAAACUCUUUGGGAUU
...................(((.........................(((((((.........(((((.((((....)))).))))).)))))))...((((((.....))))))))).. (-17.24 = -18.30 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:57:00 2006