Locus 7791

Sequence ID 3L_DroMel_CAF1
Location 20,798,556 – 20,798,646
Length 90
Max. P 0.743295
window12679

overview

Window 9

Location 20,798,556 – 20,798,646
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 81.77
Mean single sequence MFE -24.96
Consensus MFE -18.70
Energy contribution -19.65
Covariance contribution 0.95
Combinations/Pair 1.30
Mean z-score -1.71
Structure conservation index 0.75
SVM decision value 0.46
SVM RNA-class probability 0.743295
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20798556 90 + 23771897
GACCACUAGCCCGCUA-GCUUUUUAAUUAAAAAUUUAGAGAGCUUGACGUGGGCUAGUUUAUAUUGGAAAUAACAAGCAUUUGCCGUGUUG
....((((((((((.(-(((((((((........))))))))))....))))))))))............(((((.((....))..))))) ( -30.50)
>DroSec_CAF1 55137 90 + 1
GACCACUAGCCCGCUG-GCCUUUUAAUUAAAAAUUUAGAGAGCGUGAUGUGGGCUAGUUUAUAUGUGAAAUAUCAAGCAUACGCCGUGCUG
....(((((((((((.-(((((((.............))))).)).).)))))))))).................(((((.....))))). ( -25.42)
>DroSim_CAF1 53668 90 + 1
GACCACUAGCCCGCUG-GCUUUUAAAUUAAAAAUUUAGAGAGCGUGAUGUGGGCUAGUUUAUAUGUGAAAUAUCAAGCAUACGCCGUGCUG
....((((((((((..-((((((((((.....)))).)))))).....)))))))))).................(((((.....))))). ( -26.20)
>DroEre_CAF1 54624 89 + 1
GAGCACUAGUCCGCUG-GCUUUUUAAUUAAAAAUGUGGAGAGCGUACCGUGGGCUAGUUUAAAUGCGGAAUAUCAGGCAUCCG-CGUGCUG
.(((((((((((((.(-((((((((..........))))))))...).))))))))))....(((((((..........))))-)))))). ( -31.00)
>DroYak_CAF1 52392 90 + 1
GACCACUAGCCUGCUG-GCUUUUAAAUUAAAAAUGUAGAGAGCGUGACGUGGGCUAGUUUAUAUGUGAAAUAUCAAGCAUACGCCGUGCUG
....(((((((..(..-((((((..............)))))).....)..))))))).................(((((.....))))). ( -21.54)
>DroAna_CAF1 55581 82 + 1
----A-----CUGCUGGGCUUUUUAAUUAAAAAUGUAGCAAGUGCGGGGAGCUCCAACUGAAAUGUGAAAUAUCAAGCAUACGCCGUGUUG
----.-----.(((((.(.((((.....)))).).)))))((..(((.(.(((.....(((.((.....)).))))))...).)))..)). ( -15.10)
>consensus
GACCACUAGCCCGCUG_GCUUUUUAAUUAAAAAUGUAGAGAGCGUGACGUGGGCUAGUUUAUAUGUGAAAUAUCAAGCAUACGCCGUGCUG
....((((((((((...((((((((..........)))))))).....)))))))))).................(((((.....))))). (-18.70 = -19.65 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:59 2006