Locus 7790

Sequence ID 3L_DroMel_CAF1
Location 20,794,465 – 20,794,575
Length 110
Max. P 0.991135
window12678

overview

Window 8

Location 20,794,465 – 20,794,575
Length 110
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 73.33
Mean single sequence MFE -24.76
Consensus MFE -14.43
Energy contribution -14.67
Covariance contribution 0.23
Combinations/Pair 1.20
Mean z-score -2.27
Structure conservation index 0.58
SVM decision value 2.25
SVM RNA-class probability 0.991135
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20794465 110 - 23771897
GAAAAGAAUAUGUUGUAAUGACAGCGGCUGCUUAUAUGUAAAGGUCACUGUACUCUAGUACAGUUAUAAAGAAUAGCAGCCAAAUAGCAGCGAACAGUAUUGUCGCUCUC----
...........(((((....)))))(((((((...........((.(((((((....))))))).)).......)))))))....((.(((((.(......)))))))).---- ( -31.27)
>DroSec_CAF1 50345 102 - 1
AAAAUUAAUAUGUUGAAGUGUAUUCAUUUGCUUAUAUCUAAUGACCACUGUACUCCAGUACGGUUAUAAAGAAUAGCAGUCAAAA------------CAUUGUAACACUUGGUU
..((((((..(((((.(((((.((...(((((....(((.((((((...((((....))))))))))..)))..)))))..)).)------------)))).))))).)))))) ( -20.10)
>DroSim_CAF1 48758 102 - 1
AAAAUUAAUAUGUUGUAAUGAAAGCUGUUGCUUAUAUCUAAAGACCACUGUACUUCAGUACGGUUAUAAAGAAUAGCAGCCAAAA------------CAUUGUAACACGUUGUU
.....(((..((((((((((......((((((....(((.......(((((((....))))))).....)))..)))))).....------------))))))))))..))).. ( -22.90)
>consensus
AAAAUUAAUAUGUUGUAAUGAAAGCAGUUGCUUAUAUCUAAAGACCACUGUACUCCAGUACGGUUAUAAAGAAUAGCAGCCAAAA____________CAUUGUAACACUU_GUU
...........(((((((((......((((((....(((.......(((((((....))))))).....)))..)))))).................)))))))))........ (-14.43 = -14.67 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:58 2006