Locus 779

Sequence ID 3L_DroMel_CAF1
Location 2,334,814 – 2,334,911
Length 97
Max. P 0.626105
window1198

overview

Window 8

Location 2,334,814 – 2,334,911
Length 97
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 80.05
Mean single sequence MFE -25.74
Consensus MFE -14.84
Energy contribution -14.90
Covariance contribution 0.06
Combinations/Pair 1.24
Mean z-score -1.84
Structure conservation index 0.58
SVM decision value 0.19
SVM RNA-class probability 0.626105
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2334814 97 + 23771897
AAC-UAUGGCGUCUGUUAGAGCAAAGUU----AGUUUUGCAGC-------GGGAUAUUCUUCAAACUUUUCA---CUCACUUCCGCCGCUGGCAAAAAAAAGGCGUCAAGUA
.((-(.(((((((((((((.((((((..----..)))))).((-------((((..................---.....))))))..))))).......))))))))))). ( -24.61)
>DroSec_CAF1 84060 95 + 1
AAC-UAUGGCGUCUGUUA--GCAAAGUU----AGUUUUGCAGC-------GGAAUAUUCUUCAAACUUUUCA---CUCACUUCCGCCGCUGGCAAAAAAAAGGCGUCAAGUA
.((-(.((((((((((((--((...((.----......)).((-------((((..................---.....)))))).)))))).......))))))))))). ( -23.91)
>DroSim_CAF1 84233 95 + 1
AAC-UAUGGCGUCUGUUA--GCAAAGUU----AGUUUUGCAGC-------GGAAUAUUCUUCAAACUUUUCA---CUCAGUUCCGCCGCCGGCAAAAAAAAGGCGUCAAGUA
.((-(.((((((((....--((((((..----..)))))).((-------(((((.................---....)))))))..............))))))))))). ( -25.00)
>DroEre_CAF1 89329 98 + 1
AAC-UAUGGCGUCUGUUA--GCAAAGUUAGUUAGUUUUGCAGC-------GGAAUAUUCUUCAAACUUUUUA---CUCACUUCCGCCGCUGGCAAAA-CAAGGCGUCAAGUA
.((-(.((((((((..((--((.......))))((((((((((-------((....................---..........))))).))))))-).))))))))))). ( -28.31)
>DroYak_CAF1 86955 94 + 1
AAC-UAUGGCGUCUGUUA--GCAAAGUU----AGUUUUGCAGC-------GGAAUAUUCUUCAAACUUUUCA---CUCACUUCCGCCGCUGGCAAAA-CAAGGCGUCAAGUA
.((-(.((((((((..((--((...)))----)((((((((((-------((....................---..........))))).))))))-).))))))))))). ( -27.01)
>DroAna_CAF1 80762 94 + 1
ACUAAAUGGUGUCGGCUG--GGAAAGUU----UACUUUGUAACAGCGACAGGAGAAUUCUUGGAACUUUUUGCAGCUCACUCCAG------------GAAAGGCAACGAGUA
(((...(((.((.(((((--((((((((----(...((((....))))((((......))))))))))))).))))).)).))).------------....(....).))). ( -25.60)
>consensus
AAC_UAUGGCGUCUGUUA__GCAAAGUU____AGUUUUGCAGC_______GGAAUAUUCUUCAAACUUUUCA___CUCACUUCCGCCGCUGGCAAAAAAAAGGCGUCAAGUA
......((((((((......((((((........))))))............................................(((...))).......)))))))).... (-14.84 = -14.90 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:58 2006