Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,790,725 – 20,790,824 |
Length | 99 |
Max. P | 0.845066 |
Location | 20,790,725 – 20,790,824 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 70.69 |
Mean single sequence MFE | -24.19 |
Consensus MFE | -10.94 |
Energy contribution | -13.33 |
Covariance contribution | 2.39 |
Combinations/Pair | 1.27 |
Mean z-score | -1.87 |
Structure conservation index | 0.45 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.845066 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20790725 99 + 23771897 UAAGGUACUCAGCUUUUAAUGUAUUCACAUUUUGGAGGAGGGUGGAAAAUGUUCGCCACACAAUUUGUGGUAAAUU-UAUUCAACUUUAACAUUCGAACU-------------------- ((((((.(((..((...(((((....)))))..))..)))....(((...(((..(((((.....)))))..))).-..))).))))))...........-------------------- ( -21.50) >DroSec_CAF1 46272 102 + 1 UAAGGUACUCAGCCUUUAAUGUAUUCACAUUUCGGAGGAGGGUUGAAAAUGUUUGCCUCACAAUUUGUGGUAAAUU-UAUUCAACUUUAUCUUAAGGACUACA----------------- ((((((((((..((...(((((....)))))..))..)))(((((((...(((((((.((.....)).))))))).-..))))))).))))))).........----------------- ( -28.30) >DroSim_CAF1 44589 119 + 1 UAAGGUACUCAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGGAAAAUGUUUGCCGCACAAUUUGUGGUAAAUU-UAUUCAACUUUAUCUUAAGGACUACAUGUGAUUUAAUACGUUG .(((((.....)))))(((((((((((((((((..((((.(((.(((...((((((((((.....)))))))))).-..))).)))...))))..)))....))))))....)))))))) ( -29.80) >DroEre_CAF1 46131 102 + 1 UAAGGUACUUAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGCAAAAUGUUUGCCACACAAUUUGUGGCAAAUU-CAGUCAACUUUAUCUCAAGGACUACA----------------- ....((((((..((((.(((((....)))))..))))..)))))).....((((((((((.....)))))))))).-.((((..(((......)))))))...----------------- ( -24.80) >DroWil_CAF1 58022 78 + 1 CAAUAUA----------------UAUAUUUUUCGGCGGGUGUU-CAG-----ACCCCGCAGACUUUUCGCUGGAUUAUUUUUAAUUUGAUCAUUCCGAAU-------------------- .......----------------........((.(((((.((.-...-----))))))).))...((((...(((((.........)))))....)))).-------------------- ( -16.10) >DroYak_CAF1 44343 102 + 1 UAAGGUACUCAGCUUUUAAUGUAUUCACAUUGCGGAGGAGGGUGGAAAAUGUUUGCCACACAGUUUGUGGUAAAUU-UAUUAAACUUUAUCUUAAAGACUACA----------------- ((((((((((..((..((((((....)))))).))..)))(((.......((((((((((.....)))))))))).-......))).))))))).........----------------- ( -24.64) >consensus UAAGGUACUCAGCUUUUAAUGUAUUCACAUUUCGGAGGAGGGUGGAAAAUGUUUGCCACACAAUUUGUGGUAAAUU_UAUUCAACUUUAUCUUAAGGACUACA_________________ ((((((.(((..((...(((((....)))))..))..)))..........((((((((((.....))))))))))........))))))............................... (-10.94 = -13.33 + 2.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:56 2006