Locus 7787

Sequence ID 3L_DroMel_CAF1
Location 20,787,952 – 20,788,054
Length 102
Max. P 0.785908
window12675

overview

Window 5

Location 20,787,952 – 20,788,054
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.57
Mean single sequence MFE -38.82
Consensus MFE -22.73
Energy contribution -22.43
Covariance contribution -0.30
Combinations/Pair 1.30
Mean z-score -2.00
Structure conservation index 0.59
SVM decision value 0.57
SVM RNA-class probability 0.785908
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20787952 102 + 23771897
GGCGACUGCAGGCGACACGGCUUCUUGUCGCAGUCGCUGAAGAUCCUGGAGCAGUACGUUCCGGGUAUGAGGUCACCUGGAAAGCGGAAGGCAGAUGUCACA
(((((((((.(....)..(((.....))))))))))))......((((((((.....))))))))..(((.(((..((....))(....)...))).))).. ( -40.00)
>DroVir_CAF1 61783 100 + 1
GGCGAUUGCAGGCGGCAGGGCUUCUUGUCGCAAUCGCUGAAGAUGCGCGAGCAAUAGGUGCCCGGUAUUAGGUCGCCUGUGAAGUGGGGUUCAAGUAUAA--
(((((((((....((((((....)))))))))))))))(((..(((....)))(((((((.((.......)).))))))).........)))........-- ( -36.30)
>DroSec_CAF1 43491 102 + 1
GGCGACUGCAGGCGACACGGCUUCUUGUCGCAGUCGCUGAAGAUCCUGGAGCAGUACGUUCCGGGAAUGAGGUCACCUGGAAAGCGGAAGGCAGAUGUCACA
(((((((((.(....)..(((.....)))))))))))).....(((((((((.....))))))))).(((.(((..((....))(....)...))).))).. ( -42.30)
>DroEre_CAF1 43125 102 + 1
GGCGACUGCAGGCGACACGGCUUCUUGUCGCAGUCGCUGAAGAUCCUGGAGCAAUAUGUUCCGGGUAUGAGGUCACCUGCAAGGCGGGAAGCAGAUGUCCCA
.((....)).((.((((..((((((((((((((..(((..(...((((((((.....))))))))..)..)))...))))..))))))))))...)))))). ( -43.20)
>DroMoj_CAF1 51350 98 + 1
GGUGACUGCAAGCGGCAGGGCUUCUUGUCGCAGUCGCUAAAGAUGCGCGAGCAGUAGGUGCCUGGUAUAAGAUCACCUGA-AAGAAGAUUUC-GAUAUAA--
(((((((((....((((((....))))))))))))))).....(((....)))..(((((.((......))..)))))((-((.....))))-.......-- ( -31.80)
>DroAna_CAF1 44665 94 + 1
GGCGACUGCAGGCGACAGGCCUUCUUGUCGCAGUCGCUGAAGAUCCUGGAGCAGUAGGUCCCCGGAAUAAGGUCACCUGCGAAUCAGA--------GUCAGA
(((((((((....((((((....)))))))))))))))...((..((((..(.((((((..((.......))..)))))))..)))).--------.))... ( -39.30)
>consensus
GGCGACUGCAGGCGACACGGCUUCUUGUCGCAGUCGCUGAAGAUCCUGGAGCAGUAGGUUCCGGGUAUGAGGUCACCUGCAAAGCGGAAGGCAGAUGUCACA
(((((((((.(((((.........))))))))))))))...((((((((.((.....)).)))))......)))..(((.....)))............... (-22.73 = -22.43 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:55 2006