| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 20,769,511 – 20,769,624 |
| Length | 113 |
| Max. P | 0.522690 |
| Location | 20,769,511 – 20,769,624 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 89.49 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -18.80 |
| Energy contribution | -19.64 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20769511 113 + 23771897 UUUGACAUUUUUACAGA----CCAGAAGCUUAAAUCGAAAAUAUCUGUGCUAAUAUUUCAGCUAUGAGACACUGUUAGAAAAUGAGCAAAAUGCAAAAUGCUAAAGGUUGAGCCUAU ((((.((((((((((((----...((........)).......))))))(((((((((((....)))))...)))))).........)))))))))).......(((.....))).. ( -16.20) >DroSec_CAF1 25189 117 + 1 UUUGACAGUUUUACAGAAAAGCCAGAAGCUUAAGUCGAAAAUAUCUGUGCUGAUAUUUCAGCUAUGAGACACUGUUAGAAAAUGAGCAAAAUGCAAAAUGCUAAAGGUUGAGCCUAU (((((((((.........((((.....))))..(((((.....))...(((((....))))).....)))))))))))).....((((..........))))..(((.....))).. ( -24.30) >DroSim_CAF1 23598 117 + 1 UUUGACAGUUUUACAGAAAAGCCAGAAGCUUAAGUCGAAAAUAUCUGUGCUGAUAUUUCGGCUAUGAGACACUGUUAGAAAAUGAGCAAAAUGCAAAAUGCUAAAGGUUGAGCCUAU (((((((((.((.((...((((.....)))).((((((((.((((......)))))))))))).)).)).))))))))).....((((..........))))..(((.....))).. ( -28.40) >DroEre_CAF1 25109 108 + 1 UUUGACAGUUUUACAGAAAAGCCAGAAGUUUAAAACGAAAAUAUCUGUGCUGAUAUUUCAGCUGUGACACACUGUUAGAAAAUGAGCAAAAUGCAA-------AAGGUUGAGCCU-- (((((((((.((((((...(((((((.((((.......)))).)))).)))((....))..))))))...)))))))))......((.....))..-------.(((.....)))-- ( -25.50) >DroYak_CAF1 23461 108 + 1 UUUGACAGUUUUACAGAAAAGCCAAAUGCUUAAAACGAAAAUAUCUGUGCUGAUAUUUCAGCUAUAAGACACUGUUAGAAAACGAGCAAAAUGCAA-------AAGGUUGAGCCU-- (((((((((.(((((((.((((.....))))............)))))(((((....))))).....)).)))))))))......((.....))..-------.(((.....)))-- ( -22.22) >consensus UUUGACAGUUUUACAGAAAAGCCAGAAGCUUAAAUCGAAAAUAUCUGUGCUGAUAUUUCAGCUAUGAGACACUGUUAGAAAAUGAGCAAAAUGCAAAAUGCUAAAGGUUGAGCCUAU (((((((((...(((((.......((........)).......)))))(((((....)))))........)))))))))......((.....))..........(((.....))).. (-18.80 = -19.64 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:51 2006