Locus 7783

Sequence ID 3L_DroMel_CAF1
Location 20,766,993 – 20,767,087
Length 94
Max. P 0.577793
window12670

overview

Window 0

Location 20,766,993 – 20,767,087
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 76.69
Mean single sequence MFE -24.17
Consensus MFE -14.86
Energy contribution -14.20
Covariance contribution -0.66
Combinations/Pair 1.18
Mean z-score -1.36
Structure conservation index 0.62
SVM decision value 0.09
SVM RNA-class probability 0.577793
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20766993 94 + 23771897
AGCAGGGCGAUGAAGGCGACAACUUCUACGUGAUUGAUGUGGGAGAGGUCGAUGUAAGUAU---AUUUAUUUUUCUUGCUAUGACCUUUGAAUUGGG
(((((((.((((((..((((..(((((((((.....)))))))))..))))..........---.))))))..)))))))....((........)). ( -26.22)
>DroPse_CAF1 23446 95 + 1
AGCAGGGCGAUGAGGGCGACAACUUCUAUGUCAUCGAUGUGGGAGAGGUUGAUGUGAGUAGUCCAUGA-A-UGGCCAUGAAUGGCCAGUAAGUACUU
.((.((((..(.(.(.((((..((((((((((...))))))))))..)))).).).)...))))....-.-((((((....))))))))........ ( -30.00)
>DroSec_CAF1 22673 94 + 1
AGCAGGGCGAUGAAGGCGACAACUUCUACGUGAUUGAUGUGGGAGAGGUCGAUGUAAGUAU---AUUUAUUUUGCUUGUUAUGAGCUUUGAAUUGGG
..((((((.((((...((((..(((((((((.....)))))))))..))))...((((((.---........))))))))))..))))))....... ( -26.60)
>DroEre_CAF1 22655 93 + 1
AGCAGGGCGAUGAAGGCGACAACUUUUACGUGAUUGAUGUGGGAGAGGUCGAUGUAUGUAU---AUGAAA-UGGCUUUUUAUGAUCUUUGAUUUCGU
......((((.(((((((((..(((((((((.....)))))))))..)))).........(---((((((-.....))))))).)))))....)))) ( -20.80)
>DroYak_CAF1 21019 82 + 1
AGCAGGGCGAUGAAGGCGACAACUUUUACGUGAUUGAUGUGGGAGAGGUCGAUGUAAGUCU---AUGAAA-UGGCU-----------UUGAUUUCGG
..((((((.((......(((..(((((((((.....)))))))))..)))(((....))).---.....)-).)))-----------)))....... ( -20.60)
>DroPer_CAF1 23379 88 + 1
AGCAGGGCGAUGAGGGCGACAACUUCUAUGUCAUCGAUGUGGGAGAGGUUGAUGUGAGUAGUCCAUGA-A-UGGC-------AGCCAGUAAGUACUU
.((.((((..(.(.(.((((..((((((((((...))))))))))..)))).).).)...))))....-.-(((.-------..)))))........ ( -20.80)
>consensus
AGCAGGGCGAUGAAGGCGACAACUUCUACGUGAUUGAUGUGGGAGAGGUCGAUGUAAGUAU___AUGAAA_UGGCUU__UAUGACCUUUGAAUUCGG
.(((..((.......))(((..(((((((((.....)))))))))..)))..))).......................................... (-14.86 = -14.20 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:49 2006