Locus 7781

Sequence ID 3L_DroMel_CAF1
Location 20,760,149 – 20,760,248
Length 99
Max. P 0.574355
window12667

overview

Window 7

Location 20,760,149 – 20,760,248
Length 99
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 72.89
Mean single sequence MFE -23.52
Consensus MFE -7.97
Energy contribution -7.69
Covariance contribution -0.28
Combinations/Pair 1.43
Mean z-score -1.72
Structure conservation index 0.34
SVM decision value 0.08
SVM RNA-class probability 0.574355
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20760149 99 - 23771897
CUACGUGACACUUGAUUUCCCACUGAGUGUUGCUUUG------CUCUGUGG-GGAAAUUCACGUUUGUCAUAAGCCAAUUUACAGAUUUUACAUUGAGUGUAAAAU-------
....(((((((.(((((((((((.(((((......))------))).))))-))))..))).))..)))))..............(((((((((...)))))))))------- ( -28.20)
>DroSec_CAF1 15827 99 - 1
CUACGUGGCACUUGAUUUCCCACUGAGUG--------------CUCUGUGAAGGAAUUUCACAUUUGUCAUUAGCAAACUCAUAGAUUUCGCAUUGAAUAUACAACUUGUAUC
....(((((((((...........)))))--------------)(((((((.(........).(((((.....))))).)))))))...))).......((((.....)))). ( -17.10)
>DroSim_CAF1 14184 92 - 1
CUACGUGGCACUCGAUUUCCCACUGAGUGUUCCUUAG------CUCUGUGA-GGAAUUUCCCAUU--------------UCACAGAUUUUACAUUGAAUAUACAACUUGUAUC
(((.(..(((((((.........)))))))..).)))------.(((((((-((......))...--------------)))))))...(((((((......)))..)))).. ( -20.40)
>DroEre_CAF1 15664 106 - 1
CUACGUGGCACUUGAUUUCCCACUGAGUUUUGCUUUG------CUCUGUGG-GUAUUUUUACAUUUGUCGUAAGCAAACUUACAGAUUUUACAUAGAAUGUGCAAUCUGUUUC
......((((..((....(((((.((((........)------))).))))-)........))..))))(((((....)))))(((((.(((((...))))).)))))..... ( -26.70)
>DroYak_CAF1 14065 112 - 1
CUACGUUGCACUUGAUUUUCCACUGAGUUUUGCUUUUUGGGGAUUUUGUGG-GGAUUUUUACAUUUGUCAUAUGCCAGCUUACAGAUUUUACAUCGAAUGUGCAAUUUGUGUC
....((((((..(((((..((((.(((((((........))))))).))))-..)...........))))..)).)))).((((((((.(((((...))))).)))))))).. ( -25.20)
>consensus
CUACGUGGCACUUGAUUUCCCACUGAGUGUUGCUUUG______CUCUGUGG_GGAAUUUCACAUUUGUCAUAAGCAAACUUACAGAUUUUACAUUGAAUGUACAAUUUGUAUC
....(..((((((...........))))))..)...........(((((((............................)))))))........................... ( -7.97 =  -7.69 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:47 2006