Locus 7780

Sequence ID 3L_DroMel_CAF1
Location 20,754,435 – 20,754,525
Length 90
Max. P 0.805481
window12666

overview

Window 6

Location 20,754,435 – 20,754,525
Length 90
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 85.80
Mean single sequence MFE -25.70
Consensus MFE -19.36
Energy contribution -20.52
Covariance contribution 1.16
Combinations/Pair 1.11
Mean z-score -1.92
Structure conservation index 0.75
SVM decision value 0.63
SVM RNA-class probability 0.805481
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20754435 90 + 23771897
CCAA-------AAACUACGCCGGACACUUUGUCCCCAGUGUCCGC----------CAUAAAGUACAGACAAACAACAAUCAAUUGUGUUGGCCAAACGAGGUUGGAA
((((-------...((.((..(((((((........)))))))((----------(.....((....)).((((.(((....))))))))))....)))).)))).. ( -22.20)
>DroSec_CAF1 13486 107 + 1
CCAAAAACCAAAAACUACGCCGGACACUUUGUCCCCAGUGUCCGCCGAAUUGGGCCAUAAAGUAAAGACAAACAACAAUCAAUUGUGUUGGCCAAACGAGGUUGGAA
(((...(((........((.((((((((........)))))))).)).....((((.....((....)).((((.(((....)))))))))))......)))))).. ( -29.60)
>DroSim_CAF1 11893 107 + 1
CCAAAAACCAAAAACUACGCCGGACACUUUGUCCCCAGUGUCCGCCGAAUUGGGCCAUAAAGUAAAGACAAACAACAAUCAAUUGUGUUGGCCAAACGAGGUUGGAA
(((...(((........((.((((((((........)))))))).)).....((((.....((....)).((((.(((....)))))))))))......)))))).. ( -29.60)
>DroEre_CAF1 13516 94 + 1
CCGA-------AAACUACGCCGGAUACUUUGUCCCC-GUGUCCGCCGAAUUGGGCCAUAAAGUAAAGACAAACAACAAUCAAUUGUGUUGGAAA-----GGUCGGAA
((..-------......((.(((((((.........-))))))).)).....((((.....((....))...(((((........)))))....-----)))))).. ( -22.30)
>DroYak_CAF1 11896 100 + 1
CCAA-------AAACUACGCCGGAUACUUUGUCCCCAGUGUCCGCCGAAUUGGGCCAUAAAGUAAAGACAAACAACGACCAAUUGUGUUGGCCAAACGCAGUCGGAA
....-------....(((...(((((((........)))))))(((......)))......)))..............((.((((((((.....)))))))).)).. ( -24.80)
>consensus
CCAA_______AAACUACGCCGGACACUUUGUCCCCAGUGUCCGCCGAAUUGGGCCAUAAAGUAAAGACAAACAACAAUCAAUUGUGUUGGCCAAACGAGGUUGGAA
((((.............((.((((((((........)))))))).)).....((((.....((....)).((((.(((....)))))))))))........)))).. (-19.36 = -20.52 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:46 2006