Locus 7778

Sequence ID 3L_DroMel_CAF1
Location 20,746,398 – 20,746,515
Length 117
Max. P 0.742995
window12664

overview

Window 4

Location 20,746,398 – 20,746,515
Length 117
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.40
Mean single sequence MFE -36.63
Consensus MFE -21.90
Energy contribution -22.43
Covariance contribution 0.53
Combinations/Pair 1.33
Mean z-score -1.65
Structure conservation index 0.60
SVM decision value 0.45
SVM RNA-class probability 0.742995
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 20746398 117 - 23771897
UUACCUCCGCAGAGCUAGUGGAUAUCUGUUUGGCUUUGGCCAGAGCCAUUUCGUUGACAUUUCUGGCCUUGCAGAUCUUGUCAACGAAACUAUUCGAU---UCCAAAAGUUCCGUUGCGA
.......(((((((((..((((.(((....(((((((....)))))))(((((((((((..((((......))))...)))))))))))......)))---))))..)))))...)))). ( -44.80)
>DroVir_CAF1 5004 120 - 1
UUACAUCGGCUGUGGUGCUGGAAAUAAGUUUGGCAACCGCCAGAGCCUCAUCGUUGACAGUGCGCGACUUGCACAGCUUGUCGAUGAAGCUGCUGGGUGAAUCGACCACAUCGGAUGCGU
...((((.(.((((((((..((......))..))...((((..(((..(.((((((((((((((.....)))))....))))))))).)..))).)))).....)))))).).))))... ( -43.90)
>DroSim_CAF1 2770 117 - 1
UUACCUCCGCAGAGCUAGUGGAUAUCUGUUUGGCUAUGGCCAGAGCCUCUUCGUUGACAUUACGGGCCUUGCAGAUCUUGUCAACGAAACUAUUCGAU---UCCAAAAGUUCCGUUGCGA
.......(((((((((..((((.(((..((((((....)))))).....((((((((((......((...))......)))))))))).......)))---))))..)))))...)))). ( -38.50)
>DroEre_CAF1 5279 117 - 1
UUACCUCCGCUGAGCUAGUGGAUAUCUUUUUGGCAAUAGCCAGAGCCUCUUCAUUGACGUUGCGGGCCUUGCAGAUCUUGUCAACGAAACUAUGUGAC---CCCAAAAGUUCCGUUGCGA
.......(((.(((((..(((......(((((((....)))))))....(((.(((((((((((.....)))))....)))))).)))..........---.)))..)))))....))). ( -29.20)
>DroWil_CAF1 5361 117 - 1
UUACCUCUGCCGAAGAUGUUGAUAUAAGUUUGGCAAUGGCCAAAGCCUCAUCAUUGACAUUUCGGGAUUUACAGGAUUUGUCAAUAAAACUAUUUGGC---GUUAAUAGAUCCGAUGUGC
.(((.((..((((.(((((..((((.((((((((....))))))..)).)).))..)))))))))........(((((((((((.........)))))---)......))))))).))). ( -28.50)
>DroYak_CAF1 2780 117 - 1
AUACCUCCGCAGAGCUAGUGGAUAUCUGUUUGGCAAUGGCCAGAGCCUCUUCAUUGACGUUGCGGGUCUUGCAGAUCUUGUCAACGAAACUAUGUGGC---CCCAAAAGUUCCGUUGCGA
.......(((((((((..(((.......((((((....))))))(((....(((...(((((((((((.....)))).)).))))).....))).)))---.)))..)))))...)))). ( -34.90)
>consensus
UUACCUCCGCAGAGCUAGUGGAUAUCUGUUUGGCAAUGGCCAGAGCCUCUUCAUUGACAUUGCGGGCCUUGCAGAUCUUGUCAACGAAACUAUUUGAC___UCCAAAAGUUCCGUUGCGA
.......(((.(((((..(((.......((((((....))))))......(((((((((......(.....)......)))))))))...............)))..)))))....))). (-21.90 = -22.43 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:44 2006