Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 20,742,322 – 20,742,442 |
Length | 120 |
Max. P | 0.891424 |
Location | 20,742,322 – 20,742,442 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -40.41 |
Consensus MFE | -39.50 |
Energy contribution | -38.62 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -1.85 |
Structure conservation index | 0.98 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 20742322 120 - 23771897 CACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGAAAUCCACUUAAUCUAUUUCGCGGCGCCGAGUACCAGAGAUUCUUUUGGGCCACCAGCAAGGAGCCGUUGACCUACUA .(((....((((((......))))))..))).(((((..(((((((...........)))))))(((.((.....((((((....))))))((.....))..)).)))...))))).... ( -39.20) >DroSim_CAF1 20856 120 - 1 CACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGGAAUCCACUUAAUCUCUUUCGCGGCGCCGAGUACCAAAGAUUCUUUUGGGCUACCAGCAAGGAGCCAUUGACCUACUA .(((....((((((......))))))..))).(((((..((((((.............))))))(((.((.....((((((....))))))((.....))..)).)))...))))).... ( -38.32) >DroYak_CAF1 32257 120 - 1 AACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGGAAUCCCCUCAAUCUUUUCCGCGGCGCUGAGUACCAGAGAUUCUUUUGGGCAACCAGCAAGGAGCCACUGACCUACUA .(((....((((((......))))))..))).(((((.(((((((.............))))))(((.(((.....)))...(((((((((....)))).)))))))).).))))).... ( -43.72) >consensus CACAAGUACGGGCACCCAAAUGCCCGAGUGUAAGGUCUGGCGGAAUCCACUUAAUCUAUUUCGCGGCGCCGAGUACCAGAGAUUCUUUUGGGCAACCAGCAAGGAGCCAUUGACCUACUA .(((....((((((......))))))..))).(((((..((((((.............))))))(((.((.....((((((....))))))((.....))..)).)))...))))).... (-39.50 = -38.62 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:56:43 2006